View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2545_low_3 (Length: 349)
Name: NF2545_low_3
Description: NF2545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2545_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 11437493 - 11437312
Alignment:
| Q |
12 |
gaagaatattagaggaaattatggtgattcatctccaagaattagcgttgcatattccgcggatgattggcggcgcgtgtcttgtgattctgatagctca |
111 |
Q |
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| T |
11437493 |
gaagaatattagaggaaattatggtgattcatctccaagaattagtgttgcatattccgcggatgattggcggcgcgtgtcttgtgattctgatagctca |
11437394 |
T |
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| Q |
112 |
atttatgaagctgttcttcattgcaaaagatccattggtatgtcnnnnnnnnntcaaattccatgtgtgttaatagatagag |
193 |
Q |
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| T |
11437393 |
atttatgaagctgttcttcattgcaaaagatccattggtatgtcaaaaaaaattcaaattccatgtgtgttaatagatagag |
11437312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 341
Target Start/End: Complemental strand, 11437265 - 11437168
Alignment:
| Q |
240 |
ttgcagatatgagttaagcatgttagagtgcatatcaaggttttgaaaaatgttggcaaccacaatttacaccgcgacgtcaaaaatgttgatatctctg |
339 |
Q |
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| T |
11437265 |
ttgcagaaatgagttaagcatgttagagtgcatatcaaggttttgaaaaatgttgg----cacaatttacaccgcgacgtcaaaaatgttgatgtctctg |
11437170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 11430097 - 11430033
Alignment:
| Q |
91 |
tcttgtgattctgatagctcaatttatgaagctgttcttcattgcaaaagatccattggtatgtc |
155 |
Q |
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| T |
11430097 |
tcttgtgattctgatagctcaatttatgaagccgttcttcattgcaaaagatcaattggtatgtc |
11430033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 11422980 - 11422852
Alignment:
| Q |
24 |
aggaaattatggtgattcatctccaagaattagcgttgcatattccgcggatgattggcggcgcgtgtcttgtgattctgatagctcaatttatgaagct |
123 |
Q |
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| T |
11422980 |
aggaaattaccgtgaatcatctccaagaattagtgtatcttattctaaggaagattggcgt---gtgtcttgtgattctgaaatttcaatttataatgct |
11422884 |
T |
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| Q |
124 |
gttcttcattgcaaaagatccattggtatgtc |
155 |
Q |
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| T |
11422883 |
gttcttcattgcaaaagatccattggtatgtc |
11422852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 11429949 - 11429889
Alignment:
| Q |
248 |
atgagttaagcatgttagagtgcatatcaaggttttgaaaaatgttggcaaccacaattta |
308 |
Q |
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| T |
11429949 |
atgaattaagcatgctaaagtgcacatcaaggttttgaaaaaggtttgcaaacaccattta |
11429889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 44907711 - 44907774
Alignment:
| Q |
90 |
gtcttgtgattctgatagctcaatttatgaagctgttcttcattgcaaaagatccattggtatg |
153 |
Q |
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| T |
44907711 |
gtcttgtgattctgaaagctcaatacatgaggcagttctccattgcaaaagatccattggtatg |
44907774 |
T |
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