View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2545_low_5 (Length: 245)
Name: NF2545_low_5
Description: NF2545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2545_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40891827 - 40891585
Alignment:
| Q |
1 |
acgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctccccc-atgaattgtat |
99 |
Q |
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| T |
40891827 |
acgacaacaatacaagcacgaaaacgcacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctccccccccatgtattgtat |
40891728 |
T |
|
| Q |
100 |
gctatccattgatttcaacgtcgtgtgttgtcgtgggttattgagtcctgctagctagcattgctcttcatataaacccttttcgagttgtatgggttga |
199 |
Q |
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| T |
40891727 |
gctatccgttgatttcaacgtcgtttgttgtcgtgggttattgaatcctgctagctaacattgctcttcatataaaccctcttcgagttgtatgggttga |
40891628 |
T |
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| Q |
200 |
gtatcctttgtactcttatttctaattgaaactcttctctgct |
242 |
Q |
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| T |
40891627 |
gtatcctttgtactcttatttctaattgaaactcttctctgct |
40891585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3450077 - 3450207
Alignment:
| Q |
1 |
acgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattgtatg |
100 |
Q |
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| T |
3450077 |
acgacaccaatacaaacacgaaaacgcacgacactaatataacccttggatgaataatgtgcagcattgcttttattctctctcccccatgtagtgtatg |
3450176 |
T |
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| Q |
101 |
ctatccattgatttcaacgtcgtgtgttgtc |
131 |
Q |
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| T |
3450177 |
ctatccgttgattccaacgtcgtgtgttgtc |
3450207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34254392 - 34254516
Alignment:
| Q |
1 |
acgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttat-tctctctcccccatgaattgtat |
99 |
Q |
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| T |
34254392 |
acgacaccaacacaagcctgaatacacacgacaatgatatagcccttggatgaaaaatgtgcagcattgcttttttctctctctcccccgtgtattgtat |
34254491 |
T |
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| Q |
100 |
gctatccattgatttcaacgtcgtg |
124 |
Q |
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||| || |||||| |||||||||| |
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| T |
34254492 |
cctacccgttgattccaacgtcgtg |
34254516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 26715225 - 26715392
Alignment:
| Q |
1 |
acgacaccaatacaagcacgaaaacacacgacaccaatataacccttggatgaagaatgtgcaacattgcttttattctctctcc-cccatgaattgtat |
99 |
Q |
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| T |
26715225 |
acgacacaattacatgcacgagaacgcacgacacacgcataacccttggataatga-tgtgcagcactgttttaattctctctcctcccatgtattgtat |
26715323 |
T |
|
| Q |
100 |
gctatccattgatttcaacgtcgtgtgttgtcgtgggtta-ttgagtcctgctagctagcattgctctt |
167 |
Q |
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| T |
26715324 |
gccattcgtcgattcgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaatagcactgctctt |
26715392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 10505544 - 10505648
Alignment:
| Q |
37 |
atataacccttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattgtatgctatccattgatttcaacgtcgtgtgttgtcgtggg |
136 |
Q |
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|||||| ||||||||||| ||||||| |||||||||||| | |||| ||| ||||||||||||||||||||| |||| | |||||||||||| || |
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| T |
10505544 |
atataatccttggatgaataatgtgcggcattgcttttatcc-----ccccaatgtattgtatgctatccattgattccaacatggtgtgttgtcgttgg |
10505638 |
T |
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| Q |
137 |
ttattgagtc |
146 |
Q |
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| T |
10505639 |
tcattgagtc |
10505648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 633909 - 633816
Alignment:
| Q |
13 |
caagcacgaaaacacacgacaccaatataaccc-ttggatgaagaatgtgcaacattgcttttattctctctcccccatgaattgtatgctatc |
105 |
Q |
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||||||||||||| |||||||||| | ||||| ||||||||| ||||| ||| ||| |||||||||||||||||| | |||||||| |||| |
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| T |
633909 |
caagcacgaaaacgcacgacaccagttaaacccattggatgaataatgtacaagattttttttattctctctcccccgtatattgtatgatatc |
633816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 30622097 - 30622053
Alignment:
| Q |
196 |
ttgagtatcctttgtactcttatttctaattgaaactcttctctg |
240 |
Q |
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| T |
30622097 |
ttgagtattctttgtactcttatttcgaattggaactcttctctg |
30622053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 39606501 - 39606414
Alignment:
| Q |
49 |
gatgaagaatgtgcaacattgcttttattctctctcccccatgaattgtatgctatccattgatttcaacgtcgtgtgttgtcgtgggt |
137 |
Q |
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| T |
39606501 |
gatgaataatgtgcagcattgcttttattttctc-cccccatgtattgtatgctagccgtcgatttcgaaattgtgtgttgtcatgggt |
39606414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 9522322 - 9522212
Alignment:
| Q |
57 |
atgtgcaacattgcttttattctctctcc-cccatgaattgtatgctatccattgatttcaacgtcgtgtgttgtcgtgggtta-ttgagtcctgctagc |
154 |
Q |
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| T |
9522322 |
atgtgcagcactgctttaattctctctcctcccatgtattgtatgccatccgacgatttgaatctcgtgtgttgtcgtgggtcatttgagtcgtgctaaa |
9522223 |
T |
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| Q |
155 |
tagcattgctc |
165 |
Q |
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||||| ||||| |
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| T |
9522222 |
tagcactgctc |
9522212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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