View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2546_low_1 (Length: 393)
Name: NF2546_low_1
Description: NF2546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2546_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 31676146 - 31675781
Alignment:
| Q |
16 |
caagttgccccacctttaacataacttccatattgcatggctcactctgacaaaatagatttgcatccatgatttctgcaatgttacctttctctatgct |
115 |
Q |
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| T |
31676146 |
caagttgccccacctttaacataacttccatattgcatggctcactctgacaaaatagatttgcatccatgatttctgcaatgatacctttctctatgct |
31676047 |
T |
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| Q |
116 |
aggtcttgcctgcaagacataccaagttatatttttctcaaggaaaaatgcaaatctttagtgattaagatatagtaaagattgaggggttttt--acat |
213 |
Q |
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| T |
31676046 |
aggtcttgcctgcaagacataccaagttatatttttctcaaggaaaaattcaaatctttagtgatta-gatatagtaaagattgaggggtttttttacat |
31675948 |
T |
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| Q |
214 |
tccttacccaatcaataatatgttggttacttgggttttcagcattatccactgcaggtctagctgaaataagttgcaaaagtatgacaccaaagctata |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31675947 |
tccttacccaatcaataatatgttggttacttgggttttcagcattatctactgcaggtctagctgaaataagttgcaaaagtatgacaccaaagctata |
31675848 |
T |
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| Q |
314 |
cacatcactaaatttggtcaaatggcagcttgaacaatatgcagggtcaaggtaccctggtgtccct |
380 |
Q |
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| T |
31675847 |
cacatcactaaatttggtcaaatggcagcttgaacaatatgcagggtcaaggtaccctggtgtccct |
31675781 |
T |
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