View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2546_low_2 (Length: 336)
Name: NF2546_low_2
Description: NF2546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2546_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 25605566 - 25605250
Alignment:
| Q |
1 |
cttcaaaggtttcccatctggggcaaatatcctatggtaattttcatatgcagcattgttgtgtttgagacgctttgcaagagcctttagggaatccttc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
25605566 |
cttcaaaggtttcccatctgggacaaatatcctatggtaattttcatatgcagcattgttgtgtttgagacgctttgcaagtgcctttaggaaatccttc |
25605467 |
T |
|
| Q |
101 |
atcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttttctttcttgagaagaagtgaatacccaacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25605466 |
atcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttctctttcttgagaagaagtgaatacccaacag |
25605367 |
T |
|
| Q |
201 |
agctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaatgccgtactcacagcaccccaataagttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25605366 |
agctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaatgccgtactcacagcaccccaataag-tcc |
25605268 |
T |
|
| Q |
301 |
aatgaaatgaggatggtg |
318 |
Q |
| |
|
|||||||||||||||||| |
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| T |
25605267 |
aatgaaatgaggatggtg |
25605250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 25625197 - 25624881
Alignment:
| Q |
2 |
ttcaaaggtttcccatctggggcaaatatcctatggtaattttcatatgcagcattgttgtgtttgagacgctttgcaagagcctttagggaatccttca |
101 |
Q |
| |
|
||||||||||| || | |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||| |||| |||| |
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| T |
25625197 |
ttcaaaggttttccgtttgggacaaatatcctatggtaattttcatatgcaacattgttgtgtttgagatgcttcgcaagtgccttaaggaaatcattca |
25625098 |
T |
|
| Q |
102 |
tcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttttctttcttgagaagaagtgaatacccaacaga |
201 |
Q |
| |
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|||| | |||||||||||||||||||||| || ||||||||||||||||| ||||| || || || |||||||||||||||||||||||||||||||| |
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| T |
25625097 |
tcaacacacatccaaatgcaggtccattaggaatcacaacccgatcgggctcaacaataatcgctttctctttcttgagaagaagtgaatacccaacaga |
25624998 |
T |
|
| Q |
202 |
gctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaatgccgtactcacagcaccccaataagttcca |
301 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
25624997 |
actgtagtcgttaaaaatggggccggcaaacaagtatgcatcagcagattcgacaatctcggcacagaatgcagtactcacagcaccccaataagttcca |
25624898 |
T |
|
| Q |
302 |
atgaaatgaggatggtg |
318 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
25624897 |
atgaaatggtgatggtg |
25624881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 309
Target Start/End: Complemental strand, 20435553 - 20435337
Alignment:
| Q |
93 |
aatccttcatcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttttctttcttgagaagaagtgaata |
192 |
Q |
| |
|
||||||||||||| | || ||||||| ||| ||||| ||| |||||||| ||| ||||| ||||| || || ||||||||||| | ||||||||| || |
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|
| T |
20435553 |
aatccttcatcaagacacacccaaatgtaggaccatttccaatcacaaccctatcaggctgaacaataatagctttttctttcttcaaaagaagtgagta |
20435454 |
T |
|
| Q |
193 |
cccaacagagctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaatgccgtactcacagcaccccaa |
292 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || || ||||| | |||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||||||| |
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| T |
20435453 |
tccaacagaactgtaatcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggcacaaaatgcagtgctcactgcaccccaa |
20435354 |
T |
|
| Q |
293 |
taagttccaatgaaatg |
309 |
Q |
| |
|
| |||||||||||||| |
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| T |
20435353 |
aatgttccaatgaaatg |
20435337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 309
Target Start/End: Complemental strand, 5331650 - 5331434
Alignment:
| Q |
93 |
aatccttcatcaaaatgcatccaaatgcaggtccattagcaaccacaacccgatcgggctgcacaatgattgccttttctttcttgagaagaagtgaata |
192 |
Q |
| |
|
||||||||||||| | || ||||||| || ||||| ||| |||||||| ||| ||||| ||||| || || ||||||||||| | |||||| || || |
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| T |
5331650 |
aatccttcatcaagacacacccaaatgttggaccatttccaatcacaaccctatcaggctgaacaattatagctttttctttcttcaaaagaagcgagta |
5331551 |
T |
|
| Q |
193 |
cccaacagagctgtagtcattaaaaatgggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaatgccgtactcacagcaccccaa |
292 |
Q |
| |
|
|||||||| ||||||||||| ||||| || || ||||| | |||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||||||| |
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| T |
5331550 |
accaacagaactgtagtcattgaaaataggtccagcaaataggtatgcatcagccgattccacaatctcggcacaaaatgcagtgctcactgcaccccaa |
5331451 |
T |
|
| Q |
293 |
taagttccaatgaaatg |
309 |
Q |
| |
|
| |||||||| ||||| |
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|
| T |
5331450 |
aatgttccaataaaatg |
5331434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 1878776 - 1878727
Alignment:
| Q |
221 |
ggaccggcaaacaagtatgcatcagcagattctacaatctcagcacagaa |
270 |
Q |
| |
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||||| ||||| |||||||||||||||||||| ||||| || |||||||| |
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| T |
1878776 |
ggaccagcaaataagtatgcatcagcagattcaacaatttctgcacagaa |
1878727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 4626124 - 4626084
Alignment:
| Q |
275 |
gtactcacagcaccccaataagttccaatgaaatgaggatg |
315 |
Q |
| |
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||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
4626124 |
gtactaacagcaccccaatatgttccaatgaaatgtggatg |
4626084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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