View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2546_low_3 (Length: 309)
Name: NF2546_low_3
Description: NF2546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2546_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 16077333 - 16077048
Alignment:
| Q |
18 |
gatccatctccctcacaccccttctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctc |
117 |
Q |
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| T |
16077333 |
gatccatctccctcacaacccttctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctc |
16077234 |
T |
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| Q |
118 |
cgccaaaataccccacaacctccttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacctcattggagttat |
217 |
Q |
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| T |
16077233 |
cgccaaaataccccacaacctccttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacctcattggagttat |
16077134 |
T |
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| Q |
218 |
accaagtaaacttccgaccaaaaggattaatatcctctaagtctatctcctcnnnnnnntaattaaaagaataatatctccctttg |
303 |
Q |
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| T |
16077133 |
accaagtaaacttccgaccaaaaggattaatatcctctaagtctatctcctcaaaaaaattattaaaagaataatctctccctttg |
16077048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 16077441 - 16077378
Alignment:
| Q |
206 |
cattggagttataccaagtaaacttccgaccaaaaggattaatatcctctaagtctatctcctc |
269 |
Q |
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| T |
16077441 |
cattggagttataccaagtaaacttccgaccaagaggattaatatcctccaagtctatctcctc |
16077378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 6229025 - 6228856
Alignment:
| Q |
40 |
tctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctccgccaaaataccccacaacctc |
139 |
Q |
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| T |
6229025 |
tctttcctcccgagttctcaccgcattaaaatcccccaccaaacaccacacaccatcacctaaaccatccttcaactccaccaaattatcccataatgtt |
6228926 |
T |
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| Q |
140 |
cttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacctcatt |
209 |
Q |
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| T |
6228925 |
cttttggccactagatcacacttcgaataaatattcacgacaaaacatctagtcgccaacggaccccatt |
6228856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 3681509 - 3681671
Alignment:
| Q |
35 |
ccccttctttcctctctacttctaaccgcattgaaatcccccaccaaacaccacactccatcccctaagccttcctttacctccgccaaaataccccaca |
134 |
Q |
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| T |
3681509 |
ccccttctttcctcgcgacatatcaccgcattaaaatcccccaccaaacacca-------tcacctaacccctccttcacttccaccaaattgtcccata |
3681601 |
T |
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| Q |
135 |
acctccttttagcctccaactcacacttcgaataaacattaacaacaaaacacctaatcgacaacggacc |
204 |
Q |
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| T |
3681602 |
atctccttttagccgcaagctcacatttcgaataaatattcacaacaaaatatctagtcgccaacggacc |
3681671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 8507641 - 8507686
Alignment:
| Q |
129 |
cccacaacctccttttagcctccaactcacacttcgaataaacatt |
174 |
Q |
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| T |
8507641 |
cccacaacctccttttagccaccaaatcacacttagaatacacatt |
8507686 |
T |
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