View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2547_high_4 (Length: 270)
Name: NF2547_high_4
Description: NF2547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2547_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3904363 - 3904613
Alignment:
| Q |
1 |
cagcttgtgtatttattttggttttctatttatgtggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggtttt |
100 |
Q |
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|||||| | |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904363 |
cagcttttatatttattttagtttgctatttatgtggctgtaaatattagatacattcgcttatgtatatcaatttattttggttagttacttaggtttt |
3904462 |
T |
|
| Q |
101 |
atcaatggaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattcccatttcttttgcttaacaaaatatagcatattaaaaagcattaggg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904463 |
atcaatagaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggg |
3904562 |
T |
|
| Q |
201 |
atctcatggggtgaatctcaattgatttcaacatttagtggttggatttgg |
251 |
Q |
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|||||||||| ||||| |||||||||||||||||| |||||||||| |||| |
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| T |
3904563 |
atctcatgggttgaatgtcaattgatttcaacattcagtggttggaattgg |
3904613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 3907561 - 3907711
Alignment:
| Q |
35 |
tggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggttttatcaatggaacgtcgaaacgtctcgtgttata-t |
133 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| | ||||| | |
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| T |
3907561 |
tggctgtaaattttagatagattcgcttatgtatatcaatttatttgggttagttacttaggttttat-tttgggacgtcgaaacgtctcattttatagt |
3907659 |
T |
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| Q |
134 |
agtatcaagcagtctcattcc-catttcttttgcttaacaaaatatagcata |
184 |
Q |
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||||||||||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
3907660 |
agtatcaagcaatctcattccaaattttttttgcttaacaaaatatagcata |
3907711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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