View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2547_low_1 (Length: 584)
Name: NF2547_low_1
Description: NF2547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2547_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 34 - 413
Target Start/End: Original strand, 5972823 - 5973186
Alignment:
| Q |
34 |
gacggtcgaaactttcctccaagtcagaaccactcaaacaaagaatattatttgatgtaataactccacgatcaagtttgctnnnnnnnnnnnnnnnnnn |
133 |
Q |
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| T |
5972823 |
gacggtcgaaactttcctccaagtcagaaccactcaaacaaagaatattatttgatgtaataactccacgatcaaatttgctaaaaaaaaaaaa------ |
5972916 |
T |
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| Q |
134 |
ctccacgatcaagtaaattgtcatttgtagggatctattacataataaacgtcaaacaaacaaagagatcttcagaggagatattatatccccaataatg |
233 |
Q |
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| T |
5972917 |
ctccacgatcaagtaaattgtcatttgtagggatctattacataacaaacgttaaacaaacaaagag----------gagatattgtatccccaataatg |
5973006 |
T |
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| Q |
234 |
tatgaggtatctagtagatcaacatgctctaaattagacaaaatataataaacaccactgactctgtagctttcaccaagatcaaacttctaataccatt |
333 |
Q |
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| T |
5973007 |
tatgaggtatctagtagatcaacatgctctaaattagacaaaatatagtaaacaccactaagtgtgtagctttcaccaagatcaaacttctaataccatt |
5973106 |
T |
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| Q |
334 |
tatcttacacatcaaccaacaaannnnnnnacagaccaagctaataatctccgcccccactttcaaatatagttactaat |
413 |
Q |
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| T |
5973107 |
tatcttgcacatcaaccaacaaaattttttatagaccaagctaataatctctgcccccactttcaaatatggtttctaat |
5973186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 468 - 573
Target Start/End: Original strand, 5973382 - 5973485
Alignment:
| Q |
468 |
gttgtgtgttcttaaatatattgttgatcttgctcatcatctgttcattagttttaactaattttcactgtagggttaccaacgtccaacttgtgggagg |
567 |
Q |
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| T |
5973382 |
gttgtgagttcttaaatat--tgttcatcttgctcatcatttgttcattagttttaactaattttcactgtaggggtaccaacgtccaacttgtgggagg |
5973479 |
T |
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| Q |
568 |
atattg |
573 |
Q |
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|||||| |
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| T |
5973480 |
atattg |
5973485 |
T |
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