View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2547_low_2 (Length: 404)
Name: NF2547_low_2
Description: NF2547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2547_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 63 - 389
Target Start/End: Complemental strand, 6730733 - 6730407
Alignment:
| Q |
63 |
ttataaagttggccaagaggagtgctagttatggcatgttttcgttgagctttcttagttgaaagttgatgcttcaattttgaggttctcagatcaaata |
162 |
Q |
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| T |
6730733 |
ttataaagttggccaagaggagtgctagttatagcatgtttccgttgagctttcttagttgaaagttgatgcttcaattttgaggttctcagatcaaata |
6730634 |
T |
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| Q |
163 |
tgacgtcaatcgcttacaacatatttttgaaaattgatcatcataaataaagtggtggaattcatatgaatttaactaaataaatgagtaaataaagaga |
262 |
Q |
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| T |
6730633 |
tgacgtcaatcgcttacaacatatttttgaaaattgatcatcatacataaaatggtgggactcatatgaatttaactgaataaataagtaaataaagaga |
6730534 |
T |
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| Q |
263 |
gtattgagtgttcttaacgattctctcatttgaccaataatatccttcattgcaaccccaaagaaactata-tccatatttcaattaacattcaaatcat |
361 |
Q |
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| T |
6730533 |
gtattgagtgttcttaacgattctctcatttgaccaataatatccttcattgcaa-cccaaagaaaagatattccatatctcaattaacattcaaatcat |
6730435 |
T |
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| Q |
362 |
tttatttggtgtcttgtaaaatacaaag |
389 |
Q |
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| T |
6730434 |
tttatttggtgtcttgtaaaatacaaag |
6730407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 6730782 - 6730749
Alignment:
| Q |
16 |
aatatccttcataagtttgtttatgacgttttgt |
49 |
Q |
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| T |
6730782 |
aatatccttcataagtttgtttatgaagttttgt |
6730749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 43617945 - 43617887
Alignment:
| Q |
108 |
tgagctttcttagttgaaagttgatgcttcaattttgaggttctcagatcaaatatgac |
166 |
Q |
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| T |
43617945 |
tgagctttcttagtacaaagttgatgcttcaactatgaggttctcggttcaagtatgac |
43617887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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