View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2547_low_3 (Length: 397)
Name: NF2547_low_3
Description: NF2547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2547_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 31724549 - 31724917
Alignment:
| Q |
10 |
attatactcataaacaacaattttcagaattcatgctcttatggaatcaaaacaacttccttaatcccatgaatatggttgaacaaatctaaactcacac |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31724549 |
attataatcataaacaacaattttcagaattcatgctcatatggaatcaaaacaacttccttaatcccatgaatatggttgatcaaatctaaactcacac |
31724648 |
T |
|
| Q |
110 |
gaccatattcggaatccccccatgccaaacctccatgtattctgattttataaaaatatctcgtccttgacttcttccacccactaccattacataatgt |
209 |
Q |
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|||||||||||||||| ||||||||||||| || ||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31724649 |
gaccatattcggaatcaccccatgccaaacttc-atgtattctgactttctaaaaaaatctcgtccttgacttcttccacccactaccattacataatgt |
31724747 |
T |
|
| Q |
210 |
gaaccactcctacttgcaacnnnnnnngtaagggagtatatctccgaagctctgtacctaagcattgtgatctcacatctaaaagtactaagtagacacc |
309 |
Q |
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|||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31724748 |
gaaccacttctagttgcaacatctttcgtaagggagtatatctccgaagctctgtacctaagcattgtgatctcacatctaaaagtactaagtagacatc |
31724847 |
T |
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| Q |
310 |
catatgatgacaaaatatatctgatatgaatcacataccacattctttctagaaccttcaaaggtctgat |
379 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31724848 |
catatgatgacaaaatatatctgatatgaatcgcataccacattctttctagaaccttcaaaggtctgat |
31724917 |
T |
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