View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2547_low_4 (Length: 347)
Name: NF2547_low_4
Description: NF2547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2547_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 13706614 - 13706944
Alignment:
| Q |
1 |
cgtcttattgaacatgtaatttcattcatatacctaatccaaatgagatatacaaatcttttataccaaaatgccaaggatctaaattcgagtatgagtt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
13706614 |
cgtcttattgaacatgtaatttcactcatatacctaatccaaatgagatatacaaatcttttatagaaaaatgccaaggatgtgaattcgagtatgagtt |
13706713 |
T |
|
| Q |
101 |
tgggtgtggaacaacgttttttagttatgttatgaagaatgaatatgtagaaatactagaactcttacacagttctcgggtttgagtttcgcgagcgtcc |
200 |
Q |
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| T |
13706714 |
tgggtgtggaacaacgttttttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttctcgggtttgagtttcgccagcgtcc |
13706813 |
T |
|
| Q |
201 |
tagaagaatgataactgtaaaaatgtattgtattttatctttgagatttaatgnnnnnnnctttgtcatgtaccgagacaccactcatggttcaatattt |
300 |
Q |
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| T |
13706814 |
tagaagaatgacaactgtaaaaatatattgtattttatctttgagatttaagaattttttctttgttatgtaccgagacaccactcatggttcaatattt |
13706913 |
T |
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| Q |
301 |
tatagattgaacttaaatcttttttgttcat |
331 |
Q |
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| T |
13706914 |
tatagatcgaacttaaatcttttttgttcat |
13706944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 13714105 - 13714435
Alignment:
| Q |
1 |
cgtcttattgaacatgtaatttcattcatatacctaatccaaatgagatatacaaatcttttataccaaaatgccaaggatctaaattcgagtatgagtt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
13714105 |
cgtcttattgaacatgtaatttcactcatatacctaatccaaatgagatatacaaatcttttatagaaaaatgccaaggatgtgaattcgagtatgagtt |
13714204 |
T |
|
| Q |
101 |
tgggtgtggaacaacgttttttagttatgttatgaagaatgaatatgtagaaatactagaactcttacacagttctcgggtttgagtttcgcgagcgtcc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||| ||||||| |
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| T |
13714205 |
tgggtgtggaacaacgttttttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttctcgggtttgagtttcgccagcgtcc |
13714304 |
T |
|
| Q |
201 |
tagaagaatgataactgtaaaaatgtattgtattttatctttgagatttaatgnnnnnnnctttgtcatgtaccgagacaccactcatggttcaatattt |
300 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
13714305 |
tagaagaatgacaactgtaaaaatatattgtattttatctttgagatttaagaattttttctttgttatgtaccgagacaccactcatggttcaatattt |
13714404 |
T |
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| Q |
301 |
tatagattgaacttaaatcttttttgttcat |
331 |
Q |
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| T |
13714405 |
tatagatcgaacttaaatcttttttgttcat |
13714435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 171 - 331
Target Start/End: Original strand, 13700342 - 13700502
Alignment:
| Q |
171 |
agttctcgggtttgagtttcgcgagcgtcctagaagaatgataactgtaaaaatgtattgtattttatctttgagatttaatgnnnnnnnctttgtcatg |
270 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||| |
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| T |
13700342 |
agttctcgggtttgagtttcgccagcgtcctagaagaatgataactgtaaaagtatattgtattttatctttgagatttatggtttttttctttgtcatg |
13700441 |
T |
|
| Q |
271 |
taccgagacaccactcatggttcaatattttatagattgaacttaaatcttttttgttcat |
331 |
Q |
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| T |
13700442 |
taccgagacaccactcatggttcaatattttatagatcgaacttaaatcttttttgttcat |
13700502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17390656 - 17390892
Alignment:
| Q |
1 |
cgtcttattgaacatgtaatttcattcatatacctaatccaaatgagat-atacaaatcttttataccaaaatgccaaggatctaaattcgagtatgagt |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||| | |||| |||||||||| |
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| T |
17390656 |
cgtcttattgaacatgtaatttcactcatatacctaatccaaatgtgatgatacaaatcttttatagcaaaataccaaggatttgaatttgagtatgagt |
17390755 |
T |
|
| Q |
100 |
ttgggtgtggaacaacgttttttagttatgttatgaagaatgaatatgtagaaatactagaactcttacacagttctcgggtttgagtttcgcgagcgtc |
199 |
Q |
| |
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||||||| | |||||||||||||||||||||| | || |||| ||||| ||||||||||||||| | ||||||||||||||||||||| ||| | |
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| T |
17390756 |
ttgggtgggtaacaacgttttttagttatgtttttaaaaatgggcatgtaccaatactagaactcttggagagttctcgggtttgagtttcgtcagcttt |
17390855 |
T |
|
| Q |
200 |
ctagaagaatgataactgtaaaaatgtattgtatttt |
236 |
Q |
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||||||||||||||||| |||||| ||||||||||| |
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| T |
17390856 |
ctagaagaatgataactataaaaaattattgtatttt |
17390892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 231 - 331
Target Start/End: Original strand, 17394275 - 17394375
Alignment:
| Q |
231 |
tattttatctttgagatttaatgnnnnnnnctttgtcatgtaccgagacaccactcatggttcaatattttatagattgaacttaaatcttttttgttca |
330 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17394275 |
tattttatctttgagatttaaggtttttttctttgtcatgtaccgagacactactcatggttcaatattttatagatcaaacttaaatcttttttgttca |
17394374 |
T |
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| Q |
331 |
t |
331 |
Q |
| |
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| T |
17394375 |
t |
17394375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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