View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2547_low_6 (Length: 272)
Name: NF2547_low_6
Description: NF2547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2547_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 3635459 - 3635338
Alignment:
| Q |
11 |
caaaggaccaaacaatgcaatggaagcagattcaacagcaccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaaca |
110 |
Q |
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| T |
3635459 |
caaaggaccaaacaatgcaatggaagcagattcaacagccccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaaca |
3635360 |
T |
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| Q |
111 |
gagaattcccacattctgcaac |
132 |
Q |
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| T |
3635359 |
gagaattcccacattctgcaac |
3635338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 3644887 - 3644771
Alignment:
| Q |
15 |
ggaccaaacaatgcaatggaagcagattcaacagcaccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagaga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3644887 |
ggaccaaacaatgcaatggaagcagattcaacagcaccatatattgctgcatagagcagtgagtctggccaaatactgatcatatataaaccaacagaaa |
3644788 |
T |
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| Q |
115 |
attcccacattctgcaa |
131 |
Q |
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| T |
3644787 |
attcccacattctgcaa |
3644771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 3635282 - 3635211
Alignment:
| Q |
186 |
gacccatttggtccctcaaaattttcttgtagtccaatttagtcacgacacaaaataatacacaaactagtt |
257 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635282 |
gacccatttggtccctcaaaatttgctcgtagtccaatttagtcacgacacaaaataatacacaaactagtt |
3635211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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