View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2548_high_1 (Length: 312)
Name: NF2548_high_1
Description: NF2548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2548_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 21200160 - 21199945
Alignment:
| Q |
21 |
aaaacaaataatcaacggcatagataatacagttcagaagcaagttgaataagaaagtatgcctctttcttgctgatatcaacagtttgttccgtaatag |
120 |
Q |
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| T |
21200160 |
aaaacaaataatcaacggcatagataatatagttccgaagagagttgcataagaaagcatgcctctttcttgctgatatcaacagtttgttccgtgat-g |
21200062 |
T |
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| Q |
121 |
cgccaatatcagagatttctaggttttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagt |
220 |
Q |
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| T |
21200061 |
tgccaatatcagagatttccagcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagt |
21199962 |
T |
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| Q |
221 |
ttccttaacaaacccgc |
237 |
Q |
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| T |
21199961 |
ttccttaacaaaaccgc |
21199945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 21194866 - 21194692
Alignment:
| Q |
63 |
agttgaataagaaagtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttctaggttttgaagtagttgtataa |
162 |
Q |
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| T |
21194866 |
agttgcataagaaagcatgcctctttcttgctgatatcaacagtttgttctgtaatagcgtcaatatcagatatttctagcttttgaagtagttgtataa |
21194767 |
T |
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| Q |
163 |
ctgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaacccgc |
237 |
Q |
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| T |
21194766 |
ctgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttccttaacaagcccgc |
21194692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 232
Target Start/End: Complemental strand, 24284617 - 24284461
Alignment:
| Q |
76 |
agtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttctaggttttgaagtagttgtataactgttccaaaaac |
175 |
Q |
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| T |
24284617 |
agtatgcctcttgcttgctgatttcaacagattcttcaacaatagcaccaatgtttgtgatttcaagcttttgaagtagtggtataactgttccaaaaac |
24284518 |
T |
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| Q |
176 |
attaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
232 |
Q |
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| T |
24284517 |
attaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaa |
24284461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 24232121 - 24232279
Alignment:
| Q |
74 |
aaagtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttctaggttttgaagtagttgtataactgttccaaaa |
173 |
Q |
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|||| |||||||||||||| |||| ||||||| ||||||| |||||| ||||| || | | || ||||||||||| | || | || ||||||| |
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| T |
24232121 |
aaagcatgcctctttcttgttgatgtcaacagcttgttcctcaatagcatcaatagtctcgactccaagcttttgaagtagatttaaacttgctccaaaa |
24232220 |
T |
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| Q |
174 |
acattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
232 |
Q |
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| T |
24232221 |
acattaggcataacacaaagatcatcagaaatgataaaagtagcattttccttcacaaa |
24232279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 21194546 - 21194509
Alignment:
| Q |
266 |
tttcatgggttctgtgtcgtcaatattcagcttcatct |
303 |
Q |
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| T |
21194546 |
tttcatgggttctgtgtcgtcgatattcagtttcatct |
21194509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 24153975 - 24154031
Alignment:
| Q |
176 |
attaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
232 |
Q |
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| T |
24153975 |
attaggcatcacataaagatcgtcccgaataataaaagaagcagtttccttaacaaa |
24154031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 3151577 - 3151496
Alignment:
| Q |
151 |
gtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
232 |
Q |
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| T |
3151577 |
gtagatgtacaactgttgccaaaacattaggcatcacaaaaagatcgtcggaaatgataaaagtagcagtttcttcaacaaa |
3151496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 10989258 - 10989190
Alignment:
| Q |
146 |
ttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgc |
214 |
Q |
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| T |
10989258 |
ttgaagtagatgtataattgttccgaaaacattaggcataatagaaagctcatcagaaatgatcaatgc |
10989190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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