View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2548_low_1 (Length: 438)
Name: NF2548_low_1
Description: NF2548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2548_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 21548053 - 21548301
Alignment:
| Q |
13 |
caaagggaagcgatgagaatctagtggaaatgagagaagatgcaaactttatttgttctcagacataaaagagaaagagaaaacttgatcaaaagaaatt |
112 |
Q |
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| T |
21548053 |
caaaaggaagcgatgagaatctagtgaaaatgagagaagatgcaaattttatttgttcacagacataaaagagaaagagaaaacttgatcaaaagaaatt |
21548152 |
T |
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| Q |
113 |
tgaaccgtgtgaacataccatcaaggaacattgaaaaatgataaaataaagtgtggcagtcaaaagtcataaataagggatgctgattgggagaatttaa |
212 |
Q |
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| T |
21548153 |
tgaaccgcgtgaacataccatcaaggaacattggaaaatgataaaataaagtgtggcggtcgaaagtcataaataagggatgctgattgggagaatttga |
21548252 |
T |
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| Q |
213 |
aaaccatatgcgttatggtttagtggttagttgggagattagctcgcat |
261 |
Q |
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| T |
21548253 |
aaaccatatgcgttatggtttagtggttagttgggagattagctcgcat |
21548301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 262 - 423
Target Start/End: Original strand, 21555005 - 21555166
Alignment:
| Q |
262 |
ttaatgttagcttaggagggaaaacttaaggtgattagggtttactgccagcttggcatgtttggctttataataagggactagnnnnnnnnnnnnnnnn |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21555005 |
ttaatgttagcttaggagggaaaacttaaggtgattagggtttactgccagcttggcatgtttggctttatagtaagggactagaaaagaaaagaaaaaa |
21555104 |
T |
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| Q |
362 |
taagagtagaaactcaaggttgtcatgttgtaatcacaactcaatctcctaattctcaaatc |
423 |
Q |
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| T |
21555105 |
taagagtagaaactcaaggttgtcatgttgtaatcacagctcaatctcctaattctcaaatc |
21555166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 341
Target Start/End: Original strand, 21258100 - 21258201
Alignment:
| Q |
240 |
tagttgggagattagctcgcatttaatgttagcttaggagggaaaacttaaggtgattagggtttactgccagcttggcatgtttggc-tttataataag |
338 |
Q |
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||||||| || |||||| |||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||| || ||||||||||| |
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| T |
21258100 |
tagttggcagtttagcttgcatttaaggttagcttaggagggaaaac-taagttgattagggtttagtgccagcttggcaagttaagcttttataataag |
21258198 |
T |
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| Q |
339 |
gga |
341 |
Q |
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||| |
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| T |
21258199 |
gga |
21258201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 3808496 - 3808396
Alignment:
| Q |
230 |
gtttagtggttagttgggagattagctcgcatttaatgttagcttaggagggaaaacttaaggtgattagggtttactgccagcttggcatgtttggctt |
329 |
Q |
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||||||||||||||| |||||| | ||||||| |||| | || ||||||||||||||| ||| |||||| | ||| |||||||| || |||| |||| |
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| T |
3808496 |
gtttagtggttagttaggagatatgatcgcattaaatgctggcaaaggagggaaaacttagagtgtttagggctaacttccagcttgacaagtttagctt |
3808397 |
T |
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| Q |
330 |
t |
330 |
Q |
| |
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| |
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| T |
3808396 |
t |
3808396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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