View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2549_high_8 (Length: 229)
Name: NF2549_high_8
Description: NF2549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2549_high_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 52368473 - 52368695
Alignment:
| Q |
7 |
aaaacacagttaatcaccatatagaatactttcgttcctgtattacaatcttcatcagtgtaattatggtcaagaagaaataaatatctgnnnnnnngag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
52368473 |
aaaacacagttaatcaccatatagaatactttcgttcctgtattacaatcttcatcagtgtaattatagtcaagaagaaataaatatctgaaaaaaagag |
52368572 |
T |
|
| Q |
107 |
tttaattaccagtagaaaaatggttgtgtacttaagcttttaaaccagatatcataatacatgtgaagattgtgtccatatcgatgacgcgggtcaatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52368573 |
tttaattaccagtagaaaaatggttgtgtgcttaagcttttaaaccagatatcataatacatatgaagattgtgtccatatcgatgacgcgggtcaatct |
52368672 |
T |
|
| Q |
207 |
acaacaaacaagaaataatttac |
229 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
52368673 |
acaacaaacaagaaagaatttac |
52368695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 17493158 - 17493064
Alignment:
| Q |
112 |
ttaccagtagaaaaatggttgtgtacttaagcttttaaaccagatatcataatacatgtgaagattgtgtccatatcgatgacgcgggtcaatct |
206 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||| | |||||| ||||||||||| | ||| | |||||||||||| |||||||| |||||||||| |
|
|
| T |
17493158 |
ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatct |
17493064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University