View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2549_low_1 (Length: 631)

Name: NF2549_low_1
Description: NF2549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2549_low_1
NF2549_low_1
[»] chr8 (12 HSPs)
chr8 (165-600)||(6471105-6471539)
chr8 (191-365)||(13177728-13177902)
chr8 (88-159)||(6470545-6470615)
chr8 (191-272)||(24999455-24999536)
chr8 (189-368)||(13018456-13018635)
chr8 (189-273)||(36642765-36642849)
chr8 (196-342)||(38573266-38573412)
chr8 (219-299)||(10921685-10921765)
chr8 (256-317)||(515141-515202)
chr8 (218-267)||(12825293-12825342)
chr8 (212-272)||(1090016-1090076)
chr8 (187-275)||(10328635-10328723)
[»] chr5 (18 HSPs)
chr5 (368-543)||(29281253-29281425)
chr5 (188-362)||(37447211-37447384)
chr5 (204-299)||(3135639-3135734)
chr5 (191-289)||(16054420-16054518)
chr5 (196-337)||(10911042-10911181)
chr5 (190-317)||(39180338-39180465)
chr5 (200-283)||(20894230-20894313)
chr5 (91-156)||(29281654-29281718)
chr5 (199-283)||(565556-565640)
chr5 (190-346)||(39351017-39351173)
chr5 (189-365)||(8713747-8713922)
chr5 (205-349)||(10106896-10107040)
chr5 (219-299)||(12382582-12382662)
chr5 (256-303)||(13138538-13138585)
chr5 (563-600)||(5485177-5485214)
chr5 (200-281)||(20920888-20920969)
chr5 (189-302)||(36487181-36487294)
chr5 (200-232)||(1056586-1056618)
[»] chr2 (22 HSPs)
chr2 (196-365)||(13530517-13530686)
chr2 (204-365)||(14812248-14812409)
chr2 (200-365)||(15335813-15335978)
chr2 (200-365)||(36903941-36904106)
chr2 (256-365)||(12956807-12956916)
chr2 (256-328)||(31633476-31633548)
chr2 (191-302)||(2854396-2854507)
chr2 (200-363)||(13490820-13490983)
chr2 (196-365)||(37331761-37331930)
chr2 (196-303)||(19955053-19955160)
chr2 (200-370)||(3636380-3636550)
chr2 (187-365)||(9559616-9559794)
chr2 (182-303)||(7271081-7271201)
chr2 (191-340)||(39791502-39791651)
chr2 (256-299)||(7670190-7670233)
chr2 (217-368)||(31608159-31608309)
chr2 (238-297)||(34375270-34375329)
chr2 (319-365)||(248211-248257)
chr2 (319-365)||(3234633-3234679)
chr2 (197-227)||(9047579-9047609)
chr2 (198-262)||(14306172-14306236)
chr2 (194-266)||(16471198-16471270)
[»] chr7 (10 HSPs)
chr7 (238-363)||(7712502-7712627)
chr7 (198-337)||(24316236-24316375)
chr7 (190-272)||(10624915-10624997)
chr7 (197-293)||(23803404-23803500)
chr7 (188-272)||(28514605-28514689)
chr7 (188-228)||(29555826-29555866)
chr7 (211-270)||(3181251-3181310)
chr7 (189-299)||(33878197-33878307)
chr7 (240-288)||(12810514-12810562)
chr7 (247-303)||(25634746-25634802)
[»] chr4 (17 HSPs)
chr4 (200-374)||(29927285-29927460)
chr4 (189-365)||(41735394-41735565)
chr4 (190-365)||(9093554-9093729)
chr4 (187-269)||(3121024-3121106)
chr4 (210-370)||(26876047-26876207)
chr4 (200-299)||(29235568-29235667)
chr4 (263-363)||(43154533-43154633)
chr4 (188-272)||(52270431-52270515)
chr4 (196-272)||(31861617-31861693)
chr4 (200-296)||(43361830-43361926)
chr4 (189-272)||(2168421-2168504)
chr4 (198-269)||(41621889-41621960)
chr4 (228-363)||(43771847-43771981)
chr4 (306-368)||(47470926-47470988)
chr4 (200-316)||(10097942-10098058)
chr4 (256-296)||(16530231-16530271)
chr4 (187-227)||(43594945-43594985)
[»] chr3 (8 HSPs)
chr3 (190-303)||(27213971-27214084)
chr3 (200-363)||(4541282-4541443)
chr3 (190-303)||(45249395-45249508)
chr3 (200-299)||(25122370-25122468)
chr3 (200-363)||(44455068-44455231)
chr3 (378-450)||(42525454-42525526)
chr3 (199-300)||(30403260-30403361)
chr3 (212-344)||(23629251-23629381)
[»] chr1 (14 HSPs)
chr1 (219-368)||(4044845-4044996)
chr1 (189-337)||(3527688-3527834)
chr1 (256-324)||(41834776-41834844)
chr1 (218-299)||(38902208-38902290)
chr1 (198-272)||(42410262-42410336)
chr1 (190-283)||(21779976-21780069)
chr1 (200-338)||(4552135-4552273)
chr1 (256-303)||(1750952-1750999)
chr1 (256-299)||(6790679-6790722)
chr1 (204-283)||(21824244-21824323)
chr1 (256-291)||(32815217-32815252)
chr1 (200-272)||(894758-894830)
chr1 (256-300)||(21030167-21030211)
chr1 (564-600)||(21400056-21400092)
[»] chr6 (5 HSPs)
chr6 (205-370)||(31631795-31631958)
chr6 (187-364)||(7984535-7984712)
chr6 (200-365)||(40026-40191)
chr6 (190-272)||(6100730-6100812)
chr6 (566-602)||(5655338-5655374)
[»] scaffold0004 (1 HSPs)
scaffold0004 (189-290)||(97830-97931)
[»] scaffold0265 (2 HSPs)
scaffold0265 (204-283)||(3598-3677)
scaffold0265 (204-283)||(8487-8566)
[»] scaffold0172 (1 HSPs)
scaffold0172 (200-296)||(19413-19509)
[»] scaffold0019 (1 HSPs)
scaffold0019 (330-370)||(67389-67429)
[»] scaffold0002 (1 HSPs)
scaffold0002 (196-272)||(433940-434016)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 165 - 600
Target Start/End: Original strand, 6471105 - 6471539
Alignment:
Q  165 tacattgaaatcaagactaaacaaaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaa 264  Q
    |||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  6471105 tacattgaaatcaagaataaacaaa-gggtcttgttaacaagtgttctaagagcattatttaagaaatctactaaaagaaagtttgtccataaaatacaa 6471203  T
Q  265 gtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttc 364  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||     
T  6471204 gtcaaacatatataaaagtaataattatacaatttccaagataaaaactactaattttggatacttaaacaatactctagggatacttgttagcattttt 6471303  T
Q  365 cataaacaaattatacctctcatttggagtatctttctcttgagttgttcagcacaagcctcacaatgcatggtcacattaagttctactgttgtttctg 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6471304 cataaacaaattatacctctcatttggagtatctttctcttgagttgttcagcacaagcctcacaatgcatggtcacattaagttctactgttgtttctg 6471403  T
Q  465 gtccactaacctgaaacaccaacatattcccattgtagattaaggacatatttatattgactaattgaaatttatcaattgacataaagactatttacga 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6471404 gtccactaacctgaaacaccaacatattcccattgtagattaaggacatatttatattgactaattgaaatttatcaattgacataaagactatttacga 6471503  T
Q  565 ggtcctcgtgagcttagctcagccggtagggacaat 600  Q
    |||||||||||| ||| |||||||| |||| |||||    
T  6471504 ggtcctcgtgagtttaactcagccgataggaacaat 6471539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 191 - 365
Target Start/End: Complemental strand, 13177902 - 13177728
Alignment:
Q  191 gggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataatt 290  Q
    |||| ||| |||||||||||||||| |||||||||||| || || | ||||||||||||||| | ||||||||||||||||| || ||||||| |||| |    
T  13177902 gggtcttgctaacaagtgtcctaagggcattgtttaaggaatcttcaaaaagaaagtttgtcttgaaaatacaagtcaaacacatgtaaaagtcataact 13177803  T
Q  291 atacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    | | |||||||||  |||||  ||||| ||||| || |||||||||| |||| || | |||||||||||||||||    
T  13177802 acataatttccaatataaaagttactacttttgaatgcttaaacaatgccctgagggcacttgttagcattttcc 13177728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 6470545 - 6470615
Alignment:
Q  88 catcatcaattcatgctcacttggcaaatatgatgatgcaaaacatgaaaagatggacatgcccaaattata 159  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6470545 catcatcaattcatgctgacttggcaa-tatgatgatgcaaaacatgaaaagatggacatgcccaaattata 6470615  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 24999536 - 24999455
Alignment:
Q  191 gggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    |||| ||||||||||||| |||||| |||||||| ||| |||| || |||||||| | |||| | |||||||||||||||||    
T  24999536 gggtcttgttaacaagtgccctaagggcattgttaaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaaca 24999455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 368
Target Start/End: Original strand, 13018456 - 13018635
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaag-aaagtttgtccttaaaatacaagtcaaacatatataaaagtaata 287  Q
    |||||| |||||||||||||||||||| |||||||||||| |||| | |||||| ||| | | || | |||||| ||||||||||| | | ||||| |||    
T  13018456 aagggtcttgttaacaagtgtcctaagggcattgtttaaggaaccca-taaaagaaaaatatatcttgaaaatataagtcaaacatttgttaaagtcata 13018554  T
Q  288 attatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttccata 368  Q
     |  ||||||||||||   ||||  | ||| ||||  || |||||||||| |||| || | |||||||| |||||||||||    
T  13018555 ttcgtacaatttccaatgcaaaagttgctacttttatatgcttaaacaatgcccttagggcacttgttaacattttccata 13018635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 36642849 - 36642765
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacat 273  Q
    |||||| ||||||| |||||| ||||||||||||||||||  | |||| ||| |||| | |||| | ||||||||||||||||||    
T  36642849 aagggtcttgttaataagtgttctaagagcattgtttaaggtatctacaaaaggaaattatgtcttgaaaatacaagtcaaacat 36642765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 342
Target Start/End: Original strand, 38573266 - 38573412
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattataca 295  Q
    |||||||||||||  |||||| ||||||||||| |||| |  |||||||| | || | | |||||| ||||||||||| | |  |||| ||||   ||||    
T  38573266 ttgttaacaagtgctctaagaacattgtttaaggaacccataaaaagaaattatgccttgaaaatataagtcaaacatttgttgaagttataaccgtaca 38573365  T
Q  296 atttccaagctaaaaactactaattttggatacttaaacaataccct 342  Q
    ||||||||   ||||  ||||| |||| |||||||||||||||||||    
T  38573366 atttccaatgcaaaagttactacttttagatacttaaacaataccct 38573412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 10921685 - 10921765
Alignment:
Q  219 attgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    |||||||||| ||||||| | |||||  |||||||| ||||||||||||||||| || ||||| | |||| || |||||||    
T  10921685 attgtttaagtaacctacaataagaatttttgtcctgaaaatacaagtcaaacacatgtaaaaatcataactacacaattt 10921765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 515202 - 515141
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactacta 317  Q
    ||||||||||||||| |||| ||||||| |||| || |||||||||||  |||||| |||||    
T  515202 aaaatacaagtcaaatatatgtaaaagtcataactacacaatttccaatttaaaaattacta 515141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 12825342 - 12825293
Alignment:
Q  218 cattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtc 267  Q
    |||| |||||||||||||| |||||||| |||||| | ||||||||||||    
T  12825342 cattatttaagaaacctacaaaaagaaaatttgtcttaaaaatacaagtc 12825293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 1090016 - 1090076
Alignment:
Q  212 taagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    |||| |||||||||||| |||| || ||||| || |||||| | |||||||||||||||||    
T  1090016 taagggcattgtttaaggaacccacaaaaaggaattttgtcttgaaaatacaagtcaaaca 1090076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 10328635 - 10328723
Alignment:
Q  187 aaaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatat 275  Q
    |||||||| ||  ||||||||||| |||| |  |||||||||||| |||  |||||||| |||||| |  ||||| |||||||||||||    
T  10328635 aaaagggtttttctaacaagtgtcgtaagggtgttgtttaagaaatctataaaaagaaattttgtcttacaaatataagtcaaacatat 10328723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 368 - 543
Target Start/End: Complemental strand, 29281425 - 29281253
Alignment:
Q  368 aaacaaattatacctctcatttggagtatctttctcttgagttgttcagcacaagcctcacaatgcatggtcacattaagttctactgttgtttctggtc 467  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||   ||| |||||||    
T  29281425 aaacaaagtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccac---tgtctctggtc 29281329  T
Q  468 cactaacctgaaacaccaacatattcccattgtagattaaggacatatttatattgactaattgaaatttatcaat 543  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| ||||||| ||| ||||||||||||    
T  29281328 cactaacctgaaacaccaacaaattcccattgtggattaagaacatgtttagattgactgattaaaatttatcaat 29281253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 188 - 362
Target Start/End: Complemental strand, 37447384 - 37447211
Alignment:
Q  188 aaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaata 287  Q
    ||||||| ||| ||||||||| ||||||| ||||||||||| ||||||| |||||||| |||||| | |||||| |||||||||| |||||||| | |||    
T  37447384 aaagggtcttgctaacaagtgccctaagaacattgtttaaggaacctacaaaaagaaactttgtcttgaaaatataagtcaaacacatataaaattcata 37447285  T
Q  288 attatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattt 362  Q
    | |  | ||||| |||  |||| | ||||| |||| |||||||||||||| |||| |||| | ||||||||||||    
T  37447284 actgcataattttcaa-ttaaatattactacttttagatacttaaacaatgccctgagagcagttgttagcattt 37447211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 3135734 - 3135639
Alignment:
Q  204 aagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    |||||||||||| | ||||||||||||||| |  ||||||||||||||| | |||||||||||||||||||||||||||| |||| || |||||||    
T  3135734 aagtgtcctaagggtattgtttaagaaaccaataaaaagaaagtttgtcataaaaatacaagtcaaacatatataaaagtcataactacacaattt 3135639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 16054518 - 16054420
Alignment:
Q  191 gggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataat 289  Q
    |||| ||| ||||||||||||||||  |||||||||||||||| || |||||||| |||||  ||||||||||||||||||| |||||||||| |||||    
T  16054518 gggttttgctaacaagtgtcctaaggacattgtttaagaaacccacaaaaagaaattttgtttttaaaatacaagtcaaacacatataaaagtcataat 16054420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 10911181 - 10911042
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattataca 295  Q
    ||||||||||||| | ||||   |||||||||| |||  |  |||||||||||| || | ||||||||||  |||||||||||||||| ||||||| |||    
T  10911181 ttgttaacaagtgccataaggatattgtttaagtaacacataaaaagaaagtttatcttgaaaatacaag--aaacatatataaaagtcataattacaca 10911084  T
Q  296 atttccaagctaaaaactactaattttggatacttaaacaat 337  Q
    |||  |||| ||||||||||||||||| ||| ||||||||||    
T  10911083 attctcaagataaaaactactaattttagatgcttaaacaat 10911042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 317
Target Start/End: Original strand, 39180338 - 39180465
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataat 289  Q
    ||||| || ||||||| || ||||||  |||| |||||| |||| |  |||| |||  ||||| | |||||||||||||||||||||||||||| |||||    
T  39180338 agggtcttcttaacaaatggcctaaggacattatttaaggaacccaaaaaaaaaaaaattgtcttgaaaatacaagtcaaacatatataaaagttataat 39180437  T
Q  290 tatacaatttccaagctaaaaactacta 317  Q
    || |||||||||||| ||||| ||||||    
T  39180438 tacacaatttccaaggtaaaagctacta 39180465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 20894313 - 20894230
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagt 283  Q
    ||||||||| |||||| ||||||||||||||| |||| | |||||| |||||| | ||||||||||||||||| || |||||||    
T  20894313 taacaagtgccctaagggcattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagt 20894230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 29281718 - 29281654
Alignment:
Q  91 catcaattcatgctcacttggcaaatatgatgatgcaaaacatgaaaagatggacatgcccaaatt 156  Q
    |||||||| ||||| ||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  29281718 catcaattaatgctgacttggcaa-tatgatgatacagaacatgaaaagatggacatgcccaaatt 29281654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 565640 - 565556
Alignment:
Q  199 ttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagt 283  Q
    ||||||| |||| |||| ||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| ||||||||||    
T  565640 ttaacaaatgtcttaagggcattatttaaaaaacctacaaaaagaatttttgtcttgaaaatacaagtcaaacacatataaaagt 565556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 346
Target Start/End: Complemental strand, 39351173 - 39351017
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataat 289  Q
    ||||| || |||| || |||| ||||||||||||||||  |||  |  |||| ||| ||| || | ||||||||||||||||| || ||||||| |||||    
T  39351173 agggtcttattaagaactgtcttaagagcattgtttaaagaactcagaaaaataaattttatcatgaaaatacaagtcaaacacatctaaaagtcataat 39351074  T
Q  290 tatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaaga 346  Q
    ||||||||||| ||  |||||| ||||| || || ||  |||||||||||| |||||    
T  39351073 tatacaatttctaatgtaaaaattactacttctgaatgtttaaacaataccttaaga 39351017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 365
Target Start/End: Original strand, 8713747 - 8713922
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataa 288  Q
    |||||| |||||||| | |||||||||   ||||||||||||| | | ||||| ||| |||||| | |||||||||||||||||||| |  |||| ||||    
T  8713747 aagggttttgttaaccactgtcctaaggatattgtttaagaaatccattaaaaaaaattttgtcttgaaaatacaagtcaaacatat-tttaagtcataa 8713845  T
Q  289 ttatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
     |  |||||||| ||   ||||  |  || ||||  || ||||||||||||||| |||| |||||||||||||||||    
T  8713846 ctgcacaatttctaatacaaaagttgttacttttaaatgcttaaacaatacccttagagcacttgttagcattttcc 8713922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 349
Target Start/End: Complemental strand, 10107040 - 10106896
Alignment:
Q  205 agtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaag 304  Q
    |||||| | |||| |||||||||| || ||| ||||||||| ||| || | |||||||||| |||| |||| ||||||| |||| || ||| ||| | |     
T  10107040 agtgtcatgagagaattgtttaaggaagctattaaaagaaattttatcttgaaaatacaagccaaagatatgtaaaagtcataactacacatttttctat 10106941  T
Q  305 ctaaaaactactaattttggatacttaaacaataccctaagagta 349  Q
     |||||| ||| | ||||  ||||||||||||| | |||||||||    
T  10106940 gtaaaaaataccatttttaaatacttaaacaatgcactaagagta 10106896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 12382582 - 12382662
Alignment:
Q  219 attgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    |||||||||| ||| ||  | |||||| ||| || | |||||||||||||||||||||||||||| ||||  |||||||||    
T  12382582 attgtttaaggaacatataataagaaactttatcataaaaatacaagtcaaacatatataaaagtcataaacatacaattt 12382662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 13138585 - 13138538
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaa 303  Q
    ||||||||||||||||| |||||||||| ||||||| | |||||||||    
T  13138585 aaaatacaagtcaaacacatataaaagtcataattacataatttccaa 13138538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 5485177 - 5485214
Alignment:
Q  563 gaggtcctcgtgagcttagctcagccggtagggacaat 600  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  5485177 gaggtcctcgtgagcttagctcagttggtagggacaat 5485214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 20920888 - 20920969
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaa 281  Q
    ||||||||| ||||||  |||||||||||||| |||| | |||||| |||||| | |||||||| |||| | | ||||||||    
T  20920888 taacaagtgccctaaggacattgtttaagaaatctacaagaagaaactttgtcttgaaaatacatgtcatatacatataaaa 20920969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 36487181 - 36487294
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataa 288  Q
    |||||| ||| |||||||||   ||||| ||||||||||| |||| || |||||||| | |||  | ||||||||| |||||||||| | ||||| ||||    
T  36487181 aagggtcttgctaacaagtgctataagaacattgtttaaggaacccacaaaaagaaattatgtattgaaaatacaaatcaaacatatgttaaagtcataa 36487280  T
Q  289 ttatacaatttcca 302  Q
     | |||| ||||||    
T  36487281 ctgtacactttcca 36487294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 1056618 - 1056586
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaac 232  Q
    ||||||||||| |||||||||||||||||||||    
T  1056618 taacaagtgtcttaagagcattgtttaagaaac 1056586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 13530686 - 13530517
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattataca 295  Q
    ||||||||||||||| ||||  ||||||| ||| || | || |||| |||||||||| | ||||||||||||||||||||||| |||| ||||||| |||    
T  13530686 ttgttaacaagtgtcttaaggacattgttaaaggaatccacaaaaaaaaagtttgtcttgaaaatacaagtcaaacatatatacaagtcataattacaca 13530587  T
Q  296 atttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    |||| |||  ||||||||||||||||||||| ||||||||||||| ||||   |||||||| ||||||||    
T  13530586 attttcaaagtaaaaactactaattttggatgcttaaacaataccttaaggacacttgttaacattttcc 13530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 204 - 365
Target Start/End: Complemental strand, 14812409 - 14812248
Alignment:
Q  204 aagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaa 303  Q
    ||||||| |||||| |||||||||| || | || |||||||| ||| || | |||||||||||||||||||| ||||||| ||||||| ||||||| |||    
T  14812409 aagtgtcataagagtattgtttaaggaaacaacaaaaagaaattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaa 14812310  T
Q  304 gctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
      |||||  || || ||||| || |||||||||| || |||| | |||||||||||||||||    
T  14812309 tgtaaaagttaatacttttgaatgcttaaacaatgccgtaagggcacttgttagcattttcc 14812248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 365
Target Start/End: Original strand, 15335813 - 15335978
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| || ||| |||||||||||| |||| || || ||||  |||||| | |||||||||||||||||||| | ||||| |||||| ||||||||    
T  15335813 taacaagtgccccaagggcattgtttaaggaacccacaaagagaatttttgtcttgaaaatacaagtcaaacatatgttaaagtcataattgtacaattt 15335912  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    | ||   ||||| | ||| |||| ||| |||||||||| |||| |||| ||||||||| |||||||    
T  15335913 caaatgcaaaaattgctacttttagatgcttaaacaatgccctgagagcacttgttagtattttcc 15335978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 365
Target Start/End: Original strand, 36903941 - 36904106
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| |||||| |||||||||||| |||| || |||||||| | |||| | |||||||||||||||||  ||| ||||| ||||   ||||||||    
T  36903941 taacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttattaaagtcataaccgtacaattt 36904040  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    ||||   ||||  | ||| |||| ||| |||||||||| |||| ||   |||||||||||||||||    
T  36904041 ccaatgcaaaagttgctacttttagatgcttaaacaatgcccttaggacacttgttagcattttcc 36904106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 12956916 - 12956807
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgtt 355  Q
    ||||||||||||||||| || | ||||| |||| |||||||||||||   | |||| | ||| ||||| || ||||||||||||| |||||  |||||||    
T  12956916 aaaatacaagtcaaacacatgtcaaagtcataactatacaatttccattgttaaaatttctacttttgtatgcttaaacaataccataagaacacttgtt 12956817  T
Q  356 agcattttcc 365  Q
    ||||||||||    
T  12956816 agcattttcc 12956807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 31633548 - 31633476
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttggatac 328  Q
    |||||||||||||||||||| ||||||  |||| || |||||||||||  |||||| ||||||||||||||||    
T  31633548 aaaatacaagtcaaacatatgtaaaaggcataactacacaatttccaatgtaaaaattactaattttggatac 31633476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 2854507 - 2854396
Alignment:
Q  191 gggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataatt 290  Q
    |||| ||| ||||||||| |||||| |||| ||||||| || | ||  ||||||| |||||| | ||||||||||| |||||||| ||||||| |||| |    
T  2854507 gggtcttgctaacaagtgccctaagggcatcgtttaaggaatccacataaagaaattttgtcttgaaaatacaagttaaacatatctaaaagtcataact 2854408  T
Q  291 atacaatttcca 302  Q
    | ||||||||||    
T  2854407 acacaatttcca 2854396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 363
Target Start/End: Original strand, 13490820 - 13490983
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| ||||| ||||||||||||  |||| || |||| ||| |||||| | |||||| ||| |||||| || ||||| | |||| ||||||||||    
T  13490820 taacaagtgccctaaaagcattgtttaaagaacccacaaaaataaattttgtcttgaaaatataaggcaaacacatgtaaaaatcataactatacaattt 13490919  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcatttt 363  Q
     |||  |||||| ||||| ||||| || |||||| | | ||||||||  |||| ||| ||||||    
T  13490920 tcaatataaaaattactatttttgaatgcttaaatagtgccctaagaacacttattaacatttt 13490983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 365
Target Start/End: Original strand, 37331761 - 37331930
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattataca 295  Q
    |||||||||||||| | ||  |||||||||||  ||||| | |||||||| ||| || | |||||| |||||||| |||||| ||| | ||||||| |||    
T  37331761 ttgttaacaagtgttccaaaggcattgtttaaagaacctgcaaaaagaaattttatcttaaaaatataagtcaaatatatattaaaatcataattacaca 37331860  T
Q  296 atttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    |||  |||   ||||| ||||| |||| ||| ||||||||||| | ||| |  | |||||||||||||||    
T  37331861 attgtcaatacaaaaattactacttttagatgcttaaacaatatcttaataacatttgttagcattttcc 37331930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 196 - 303
Target Start/End: Original strand, 19955053 - 19955160
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattataca 295  Q
    ||||||||||||| | ||||||||||||||||| |||| || |||||||| | |||  | ||||||||| |||||||  | | ||||| ||||| ||| |    
T  19955053 ttgttaacaagtgccttaagagcattgtttaaggaacccacaaaaagaaattatgttttgaaaatacaaatcaaacacttgttaaagtcataatcatata 19955152  T
Q  296 atttccaa 303  Q
    ||||||||    
T  19955153 atttccaa 19955160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 370
Target Start/End: Original strand, 3636380 - 3636550
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| |||||| |||||||||||| || ||| || |||||| ||| || | || | | |||||||||| || ||||||||||||||| | || ||    
T  3636380 taacaagtgccctaagggcattgtttaaggaatctattataagaaattttatcttgaacacataagtcaaacaaatgtaaaagtaataattacagaagtt 3636479  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttccataaa 370  Q
     | || |||||  ||||| |||| | | |||||||||| |   ||| | |||||||||||||| |||||||    
T  3636480 tctaggtaaaagttactacttttagttgcttaaacaatgcatcaagggcacttgttagcatttcccataaa 3636550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 365
Target Start/End: Original strand, 9559616 - 9559794
Alignment:
Q  187 aaaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaat 286  Q
    |||||||| ||| ||||||||||| |||| | ||||||||||  ||  || |||| ||| |||||  | |||||||||||||||||  | ||||| | ||    
T  9559616 aaaagggtcttgataacaagtgtcttaagggtattgtttaaggtactcacaaaaataaattttgttttgaaaatacaagtcaaacacgtgtaaaaattat 9559715  T
Q  287 aattatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    || || |||||||||||  |||||  || || ||||| || ||||||||||  |||||| | ||||||||  |||||||    
T  9559716 aactacacaatttccaatgtaaaagttaatatttttgaatgcttaaacaatgtcctaagggcacttgttaatattttcc 9559794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 303
Target Start/End: Complemental strand, 7271201 - 7271081
Alignment:
Q  182 taaacaaaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaa 281  Q
    |||| |||| ||| ||||||||||||||  |||||  |||||||| | ||| ||  |||||||| ||| |  | ||||||||||| ||||||||||||||    
T  7271201 taaataaaaaggtcttgttaacaagtgttttaagaatattgtttagggaac-taaaaaaagaaattttattttgaaaatacaagttaaacatatataaaa 7271103  T
Q  282 gtaataattatacaatttccaa 303  Q
     | ||||||| |||||||||||    
T  7271102 ttcataattacacaatttccaa 7271081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 39791502 - 39791651
Alignment:
Q  191 gggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataatt 290  Q
    |||| |||||||||||||||||||| | |||||||||  || | || |||||||| | |||  | |||||||||||||||||| | | ||||| || ||     
T  39791502 gggtcttgttaacaagtgtcctaagggtattgtttaaagaatccacaaaaagaaattatgttttgaaaatacaagtcaaacatttgttaaagtcattatc 39791601  T
Q  291 atacaatttccaagctaaaaactactaattttggatacttaaacaatacc 340  Q
     ||||||||| ||  |||||| | ||| ||||  || |||||||||||||    
T  39791602 gtacaatttctaatataaaaattgctacttttatatgcttaaacaatacc 39791651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 7670190 - 7670233
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||||||||||||||  |||||| |||||||||||||||    
T  7670190 aaaatacaagtcaaacatatggaaaagtcataattatacaattt 7670233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 31608159 - 31608309
Alignment:
Q  217 gcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactact 316  Q
    |||||||||||||||||||  | |||||| |||||| | ||||| |||| | |||| |||||||| | |||| ||||||||||  ||  |||||| ||||    
T  31608159 gcattgtttaagaaacctataataagaaattttgtcttgaaaatgcaagactaacacatataaaaatcataactatacaatttttaatataaaaattact 31608258  T
Q  317 aattttggatacttaaacaataccctaagagtacttgttagcattttccata 368  Q
     ||||   || |||||||||| |||||| || | |||||| |||||| ||||    
T  31608259 -atttgttatgcttaaacaatgccctaaaagcatttgttatcatttttcata 31608309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 34375270 - 34375329
Alignment:
Q  238 aaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaat 297  Q
    |||| ||| |||||| | ||||||||||||||||||||||||| || ||||||| |||||    
T  34375270 aaaacaaaatttgtcttgaaaatacaagtcaaacatatataaatgtcataattacacaat 34375329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 248211 - 248257
Alignment:
Q  319 ttttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    ||||| || |||||||||||||||||| ||||||| |||||||||||    
T  248211 ttttgaattcttaaacaataccctaagggtacttgatagcattttcc 248257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 3234679 - 3234633
Alignment:
Q  319 ttttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    |||||||| |||||||||| ||||||| | |||||||||||||||||    
T  3234679 ttttggatgcttaaacaatgccctaagggcacttgttagcattttcc 3234633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 9047579 - 9047609
Alignment:
Q  197 tgttaacaagtgtcctaagagcattgtttaa 227  Q
    |||||||||||||||||||||||||||||||    
T  9047579 tgttaacaagtgtcctaagagcattgtttaa 9047609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 14306236 - 14306172
Alignment:
Q  198 gttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatac 262  Q
    |||||||||||  ||||||| ||||||||||||| | || |||||||| |||||| | |||||||    
T  14306236 gttaacaagtgctctaagaggattgtttaagaaatccacgaaaagaaattttgtcttgaaaatac 14306172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 16471270 - 16471198
Alignment:
Q  194 tgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagt 266  Q
    ||||| ||||||||||| ||||| ||||||||||| |||| || |||||||| ||| |  | |||||||||||    
T  16471270 tgttgctaacaagtgtcataagaacattgtttaaggaacccacaaaaagaaattttatgttgaaaatacaagt 16471198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 238 - 363
Target Start/End: Original strand, 7712502 - 7712627
Alignment:
Q  238 aaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttggatacttaaacaat 337  Q
    ||||||||||||||  | ||||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||| |||||||| ||| ||||||||||    
T  7712502 aaaagaaagtttgttttgaaaatacaagtcaaacaaatataaaagtgataattacacaatttctaaggtaaaaacttctaattttagatgcttaaacaat 7712601  T
Q  338 accctaagagtacttgttagcatttt 363  Q
     ||||||| ||| |||||| ||||||    
T  7712602 gccctaagggtatttgttaacatttt 7712627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 24316236 - 24316375
Alignment:
Q  198 gttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaat 297  Q
    |||||||||||||||||    ||||||| || || |||| ||||||||||||||  | ||||||||||||||| || ||||||||| ||||||| |||||    
T  24316236 gttaacaagtgtcctaatgatattgtttgaggaatctacaaaaagaaagtttgttttgaaaatacaagtcaaatatgtataaaagttataattacacaat 24316335  T
Q  298 ttccaagctaaaaactactaattttggatacttaaacaat 337  Q
    ||||||| ||||| ||||||||| |||||  |||||||||    
T  24316336 ttccaagataaaatctactaattatggatgtttaaacaat 24316375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 10624915 - 10624997
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||| |||||||||||||| ||||| |||||||||||  |||| || |||||||| | |||| | |||||||||||||||||    
T  10624915 agggtcttgttaacaagtgttctaagggcattgtttaaagaacccacaaaaagaaattatgtcttgaaaatacaagtcaaaca 10624997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 23803500 - 23803404
Alignment:
Q  197 tgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattata 293  Q
    |||||||||||||  |||||| |||||| ||| || ||| || |||||| ||| || | ||| || |||||||||| || |||||||||||||||||    
T  23803500 tgttaacaagtgttttaagagtattgttcaaggaatctattataagaaattttatcttaaaattataagtcaaacacatttaaaagtaataattata 23803404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 28514605 - 28514689
Alignment:
Q  188 aaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||||| ||||||||||||| |||||| |||||||||||| |||| |  |||||||| | || | | |||||| ||||||||||    
T  28514605 aaagggtcttgttaacaagtgccctaagggcattgtttaaggaacccataaaaagaaattatgccttgaaaatataagtcaaaca 28514689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 29555866 - 29555826
Alignment:
Q  188 aaagggtgttgttaacaagtgtcctaagagcattgtttaag 228  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  29555866 aaagggtattgctaacaagtgtcctaagagcattgtttaag 29555826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 3181310 - 3181251
Alignment:
Q  211 ctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaa 270  Q
    |||||| || |||||||||||||||| |||||| | |||||| | |||||||||||||||    
T  3181310 ctaagaacaatgtttaagaaacctacaaaaagatactttgtcttgaaaatacaagtcaaa 3181251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 33878307 - 33878197
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataa 288  Q
    |||||| ||||||||||||||  || | | |||||||||| |||  |  |||| ||| ||| |||| ||||||||| |||||||||| ||||||| ||||    
T  33878307 aagggttttgttaacaagtgttttaggggtattgtttaaggaactcagaaaaaaaaaatttatcctaaaaatacaaatcaaacatatgtaaaagtcataa 33878208  T
Q  289 ttatacaattt 299  Q
     || |||||||    
T  33878207 ctacacaattt 33878197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 12810562 - 12810514
Alignment:
Q  240 aagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataa 288  Q
    |||||| |||||| | ||||||||||||||||| |||||||||| ||||    
T  12810562 aagaaactttgtcttgaaaatacaagtcaaacacatataaaagttataa 12810514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 25634802 - 25634746
Alignment:
Q  247 tttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaa 303  Q
    ||||| || |||||||||||||||||||| ||||| | |||| || |||||||||||    
T  25634802 tttgttctaaaaatacaagtcaaacatatgtaaaaatgataactacacaatttccaa 25634746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 200 - 374
Target Start/End: Original strand, 29927285 - 29927460
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| |||||| |||||||||||| || | || |||||||| |||||| |  |||||||||||||||| |||||||||| |||| ||||||||||    
T  29927285 taacaagtgccctaagggcattgtttaaggaatccacaaaaagaaactttgtcttggaaatacaagtcaaacacatataaaagtcataactatacaattt 29927384  T
Q  300 ccaagctaaaaact--actaattttggatacttaaacaataccctaagagtacttgttagcattttccataaacaaa 374  Q
     |||  |||||  |  |||| | ||| || |||||||||| ||| ||| ||||||||||||||||||| ||||||||    
T  29927385 tcaatgtaaaatatacactactattgaatgcttaaacaatgccccaagggtacttgttagcattttcc-taaacaaa 29927460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 365
Target Start/End: Original strand, 41735394 - 41735565
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataa 288  Q
    |||||| ||||||||||||| |||||||  ||||||||||||||  || |||||||| | |||| | |||||||||||||||||  | | ||||| ||||    
T  41735394 aagggtcttgttaacaagtgccctaagaatattgtttaagaaactcacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaagtcataa 41735493  T
Q  289 ttatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
    |  ||||||||||||   ||||| | ||| |||| ||| |||||||||| ||||     ||||||||||||||||||    
T  41735494 tcgtacaatttccaatacaaaaattgctacttttagatgcttaaacaatgccct-----tacttgttagcattttcc 41735565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 365
Target Start/End: Complemental strand, 9093729 - 9093554
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataat 289  Q
    ||||| ||||||||||||||||||||  ||||||||||| |||| |  |||||||| |||| | | |||||| ||||||||||  | |  |||| ||||     
T  9093729 agggtcttgttaacaagtgtcctaaggacattgtttaaggaacccataaaaagaaattttgccttgaaaatataagtcaaacacttgtttaagttataac 9093630  T
Q  290 tatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
      |||||||| |||   ||||| ||||| |||| || |||||||||||||||| | || |||||||| ||||||||    
T  9093629 cgtacaattttcaatgcaaaaattactacttttagagacttaaacaatacccttaaagcacttgttaacattttcc 9093554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 3121024 - 3121106
Alignment:
Q  187 aaaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaa 269  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| |  |||||||| | |||| | |||||| |||||||    
T  3121024 aaaaaggtgttgttaacaagtgtcctaagagcattgtttaaggaacccataaaaagaaattatgtcttgaaaatataagtcaa 3121106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 370
Target Start/End: Complemental strand, 26876207 - 26876047
Alignment:
Q  210 cctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaa 309  Q
    |||||| | |||||||||| |||| |  |||||||| | || | | |||||||||||||||||  | | ||||| ||||   ||||||||||||   |||    
T  26876207 cctaagggaattgtttaaggaacccaaaaaaagaaattatggcttgaaaatacaagtcaaacacttcttaaagtcataaccctacaatttccaatacaaa 26876108  T
Q  310 aactactaattttggatacttaaacaataccctaagagtacttgttagcattttccataaa 370  Q
    | || ||| ||||  || ||||||||||||||| |||| ||||||||||||||||||||||    
T  26876107 agctgctacttttatatgcttaaacaatacccttagagcacttgttagcattttccataaa 26876047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 29235667 - 29235568
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    |||||||||||||||||||||| | |||| |||| || |||||||| |||||| | |||||| |||||||||| |  ||||||| |||| || |||||||    
T  29235667 taacaagtgtcctaagagcattatctaaggaacccacaaaaagaaattttgtcttgaaaatagaagtcaaacacaggtaaaagttataactacacaattt 29235568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 363
Target Start/End: Complemental strand, 43154633 - 43154533
Alignment:
Q  263 aagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattt 362  Q
    |||||| ||| || |||||||||||| ||||||||||| ||  |||||| || || ||||  ||| |||||||||| | ||| |||||||||||||||||    
T  43154633 aagtcagacacatgtaaaagtaataaatatacaatttctaatataaaaattattacttttaaatatttaaacaatatcataaaagtacttgttagcattt 43154534  T
Q  363 t 363  Q
    |    
T  43154533 t 43154533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 52270431 - 52270515
Alignment:
Q  188 aaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||||| ||||||||||||| |||||| |||||||||||| |||| || ||| |||| | |||| | |||||| ||||||||||    
T  52270431 aaagggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaggaaaatatgtcttgaaaatataagtcaaaca 52270515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 31861693 - 31861617
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    |||||||||||||||||||||| |||||||||| || | |  |||||||| | |||| | |||||| ||||||||||    
T  31861693 ttgttaacaagtgtcctaagagtattgtttaaggaatccataaaaagaaattatgtcttgaaaatataagtcaaaca 31861617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 43361926 - 43361830
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaa 296  Q
    ||||||||||||||||| ||||||||||| || | | ||||||||| ||| || | |||| | ||||||||||  | ||||||||||| ||| ||||    
T  43361926 taacaagtgtcctaagaacattgtttaaggaatccattaaaagaaactttatcttaaaaacataagtcaaacacgtttaaaagtaatacttacacaa 43361830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 2168421 - 2168504
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    |||||| ||||||||||||| ||||||  ||||||||||  |||| |  |||| ||| | |||||| |||||||||||||||||    
T  2168421 aagggtcttgttaacaagtgccctaaggacattgtttaaagaacccataaaaataaattatgtcctgaaaatacaagtcaaaca 2168504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 41621889 - 41621960
Alignment:
Q  198 gttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaa 269  Q
    ||||||||||| |||||| |||||||||||| |||| || |||||||| | |||| | ||||||||| ||||    
T  41621889 gttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaaatcaa 41621960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 363
Target Start/End: Original strand, 43771847 - 43771981
Alignment:
Q  228 gaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttggata 327  Q
    |||| |||| |||||||| |||||| | ||||||||||||||||| || | ||||| |||| |  |||| || |||  |||||| ||||| ||||| ||     
T  43771847 gaaatctacaaaaagaaactttgtcttaaaaatacaagtcaaacacatgttaaagtcataactgcacaa-ttacaatgtaaaaattactacttttgaatg 43771945  T
Q  328 cttaaacaataccctaagagtacttgttagcatttt 363  Q
    ||||||||||  | |||| | |||||||||||||||    
T  43771946 cttaaacaatgtcataagggcacttgttagcatttt 43771981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 47470926 - 47470988
Alignment:
Q  306 taaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttccata 368  Q
    |||||| ||||| ||||| ||  |||||||||| |||||||| ||||||||||||||| ||||    
T  47470926 taaaaattactacttttgaatctttaaacaatatcctaagagcacttgttagcatttttcata 47470988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 10098058 - 10097942
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||||||||| |  |||||||||| || | || || ||||| |||||| | |||||| ||| |||| | || ||||||| |||| ||||||||||    
T  10098058 taacaagtgtcctaaaaatattgtttaaggaatccacaaagagaaattttgtcttgaaaatataaggcaaatacatgtaaaagtcataactatacaattt 10097959  T
Q  300 ccaagctaaaaactact 316  Q
     |||  |||||| ||||    
T  10097958 tcaatataaaaattact 10097942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 16530231 - 16530271
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaa 296  Q
    |||||| ||||||||||||| ||||||||||||||| ||||    
T  16530231 aaaatataagtcaaacatatgtaaaagtaataattacacaa 16530271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 43594945 - 43594985
Alignment:
Q  187 aaaagggtgttgttaacaagtgtcctaagagcattgtttaa 227  Q
    |||||||| |||||||||| || ||||||||||||||||||    
T  43594945 aaaagggttttgttaacaaatgccctaagagcattgtttaa 43594985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 27214084 - 27213971
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataat 289  Q
    ||||| |||||||||||||| |||||  ||||||||||| |||  || |||||||| |||||| | |||||||||||||||||||| ||||||| ||||     
T  27214084 agggtcttgttaacaagtgttctaaggacattgtttaaggaacacacaaaaagaaactttgtcttaaaaatacaagtcaaacatatgtaaaagtcataac 27213985  T
Q  290 tatacaatttccaa 303  Q
    ||||||||||||||    
T  27213984 tatacaatttccaa 27213971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 4541443 - 4541282
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| | ||||| ||||||||||||||| ||| |||| |||  || || | ||||||||||||||| |||| ||||||| ||||||| | ||||     
T  4541443 taacaagtggcataagaacattgtttaagaaacatacaaaaaaaaa--ttatcttgaaaatacaagtcaaagatatgtaaaagttataattacaaaattc 4541346  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcatttt 363  Q
     |||  |||||| |||||||||||||| |||||||||| || |||| ||| |||||||||||||    
T  4541345 tcaatataaaaattactaattttggatccttaaacaatgccttaagggtatttgttagcatttt 4541282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 45249508 - 45249395
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataat 289  Q
    ||||| ||||||||||||| |||||| |||||||||||| |||| || |||||||| | |||| | |||||||||||||||||| | | ||||| ||||     
T  45249508 agggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacatttgttaaagtcataac 45249409  T
Q  290 tatacaatttccaa 303  Q
      ||||||||||||    
T  45249408 cgtacaatttccaa 45249395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 25122468 - 25122370
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| |||||| |||  |||||||||||||||||||  | ||||| |||| || |||||||    
T  25122468 taacaagtgtcctaagagcattgtttaaggaacctgcaaaaag-aagtttatccggaaaatacaagtcaaacatacgtgaaagtcataactacacaattt 25122370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 363
Target Start/End: Original strand, 44455068 - 44455231
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    |||||||||| |||||  | |||||||||||||  ||  ||||||| |||||| | ||||||||||||||||| | |||||||| |||| ||||||||||    
T  44455068 taacaagtgttctaaggacgttgtttaagaaactcacagaaagaaattttgtcttgaaaatacaagtcaaacacacataaaagtcataactatacaattt 44455167  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcatttt 363  Q
     |||  |||||  ||| | |||| ||| ||||||||||  | |||| | | |||||||||||||    
T  44455168 tcaatgtaaaatttacgacttttagattcttaaacaatgtcttaagggcatttgttagcatttt 44455231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 42525454 - 42525526
Alignment:
Q  378 tacctctcatttggagtatctttctcttgagttgttcagcacaagcctcacaatgcatggtcacattaagttc 450  Q
    ||||| |||||| ||||||||| | |||||| || ||||||||||||||||| |||||| |||| ||||||||    
T  42525454 tacctttcattttgagtatcttccccttgagctgctcagcacaagcctcacagtgcatgttcacgttaagttc 42525526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 30403361 - 30403260
Alignment:
Q  199 ttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatt 298  Q
    ||||||||||||||||   |||||| ||||||| | |  |||||||| |||||| | ||| ||||||| | ||| || ||||||| ||||||||||||||    
T  30403361 ttaacaagtgtcctaacgacattgtataagaaatccataaaaagaaaatttgtcttgaaactacaagttagacacatgtaaaagtcataattatacaatt 30403262  T
Q  299 tc 300  Q
    ||    
T  30403261 tc 30403260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 23629381 - 23629251
Alignment:
Q  212 taagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaa 311  Q
    |||| |||||||||||||||||| | |||  |||  ||||  | ||||||||| ||||||| || ||||||| ||||||||||||||| |||  |||||     
T  23629381 taagcgcattgtttaagaaaccttcaaaataaaa--ttgttttgaaaatacaaatcaaacacatgtaaaagtcataattatacaattttcaatgtaaaag 23629284  T
Q  312 ctactaattttggatacttaaacaataccctaa 344  Q
     ||||| ||| |||| || ||| ||| ||||||    
T  23629283 ttactactttaggatgctaaaaaaatgccctaa 23629251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 219 - 368
Target Start/End: Original strand, 4044845 - 4044996
Alignment:
Q  219 attgtttaagaaacctact--aaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactact 316  Q
    |||||||||||||||||    ||||||||||||||| | ||||||||||||||||||||||| |||| |||| ||||||||||||||| ||| |  ||||    
T  4044845 attgtttaagaaacctatataaaaagaaagtttgtcttgaaaatacaagtcaaacatatatacaagtcataactatacaatttccaagataacagttact 4044944  T
Q  317 aattttggatacttaaacaataccctaagagtacttgttagcattttccata 368  Q
    |||| | ||| ||||||||||  |||||   ||||| |||||||||| ||||    
T  4044945 aattatagatgcttaaacaatgtcctaaagatacttattagcatttttcata 4044996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 3527834 - 3527688
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataa 288  Q
    |||||| ||| ||||||||   |||||||||||||||||| || | || |||||||| |||||  |  ||||||||||||||||||||||||||| ||||    
T  3527834 aagggtcttgctaacaagtactctaagagcattgtttaaggaatccacaaaaagaaattttgttatggaaatacaagtcaaacatatataaaagtcataa 3527735  T
Q  289 ttatacaatttccaagctaaaaactactaattttggatacttaaacaat 337  Q
     || |||||||| ||  |||||  ||||| ||||  |||||||||||||    
T  3527734 ctacacaatttctaa--taaaagttactacttttatatacttaaacaat 3527688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 41834844 - 41834776
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaagctaaaaactactaattttgg 324  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||  |||||| ||||| ||||||    
T  41834844 aaaatacaagtcaaacatatataaaagtaataattacacaattttcaacgtaaaaattactagttttgg 41834776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 38902290 - 38902208
Alignment:
Q  218 cattgtttaagaaacctactaaaaga-aagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||||| |||| || |||||  ||||||||| | ||||| |||||||||||||||||||||| ||||||| |||||||    
T  38902290 cattgtttaaggaaccaacaaaaagggaagtttgtcttgaaaattcaagtcaaacatatataaaagtcataattacacaattt 38902208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 42410336 - 42410262
Alignment:
Q  198 gttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||||||||| |||||| |||||||||||| |||| || |||||||| | |||| | |||||||||||||||||    
T  42410336 gttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaaca 42410262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 21780069 - 21779976
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagt 283  Q
    ||||| ||| ||||||||  |||||  ||||||||||||||| |||| | |||||| |||||| | ||||||||||||||||| || |||||||    
T  21780069 agggttttgctaacaagttccctaatggcattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagt 21779976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 4552135 - 4552273
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||| ||||| |||||| |||||||||| || |||| ||||  ||  ||||  | ||||||||||||||||| |||||||||  |||| || |||||||    
T  4552135 taacatgtgtcttaagagtattgtttaaggaatctacgaaaaataaaattgttttgaaaatacaagtcaaacaaatataaaagacataactacacaattt 4552234  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaata 338  Q
     |||  ||| || ||||| |||| ||| |||||||||||    
T  4552235 tcaacgtaataattactatttttagatgcttaaacaata 4552273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 1750999 - 1750952
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttccaa 303  Q
    |||||| ||||||||||||||||||| | |||| ||||||||||||||    
T  1750999 aaaatataagtcaaacatatataaaaattataaatatacaatttccaa 1750952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 6790722 - 6790679
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||    
T  6790722 aaaatacaaatcaaacatataaaaaagtaataattacacaattt 6790679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 21824244 - 21824323
Alignment:
Q  204 aagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagt 283  Q
    |||| |||||||  |||||||||||||| |||| | |||||| |||||| | ||||||||||||| | | ||||||||||    
T  21824244 aagtctcctaaggacattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcatatacatataaaagt 21824323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 32815252 - 32815217
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataatta 291  Q
    |||||||||||||||||||| |||||||||||||||    
T  32815252 aaaatacaagtcaaacatatgtaaaagtaataatta 32815217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 894758 - 894830
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||||||| |||||| |||||||||||| |||| || ||| |||| | |||| | ||| |||||||||||||    
T  894758 taacaagtgccctaagggcattgtttaaggaacccacaaaaggaaattatgtcttgaaagtacaagtcaaaca 894830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 21030211 - 21030167
Alignment:
Q  256 aaaatacaagtcaaacatatataaaagtaataattatacaatttc 300  Q
    ||||||||||||||||| |||||||| |||||  |||||||||||    
T  21030211 aaaatacaagtcaaacacatataaaaataatatgtatacaatttc 21030167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 21400092 - 21400056
Alignment:
Q  564 aggtcctcgtgagcttagctcagccggtagggacaat 600  Q
    |||||||||||||||||||||||  ||||||||||||    
T  21400092 aggtcctcgtgagcttagctcagttggtagggacaat 21400056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 205 - 370
Target Start/End: Complemental strand, 31631958 - 31631795
Alignment:
Q  205 agtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaatttccaag 304  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||| | |||||| |||||||||||| || ||| | ||||||| ||||||| ||      
T  31631958 agtgtcctaagagcattgtttaaggaacttacaaaaagaaagtttgtcttgaaaatataagtcaaacatacat-aaattcataattacacaattttcatt 31631860  T
Q  305 ctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttccataaa 370  Q
     |||||  ||| | ||||||||  ||||||||| ||||||||  ||||||||| ||||||| ||||    
T  31631859 gtaaaagttaccacttttggatgtttaaacaatgccctaaga-cacttgttagtattttccttaaa 31631795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 187 - 364
Target Start/End: Original strand, 7984535 - 7984712
Alignment:
Q  187 aaaagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaat 286  Q
    |||| ||| ||| |||||||||| || ||  ||||||||||  |||| || |||||||| |||||| | ||||||||||||||||| || ||||||| ||    
T  7984535 aaaaaggttttgctaacaagtgttctgaggacattgtttaatgaacccacaaaaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtcat 7984634  T
Q  287 aattatacaatttccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttc 364  Q
    || || | ||||| |||  |||||  | ||| |||||||| ||||||||||  |||||| | ||||||||||||||||    
T  7984635 aactacaaaattttcaatgtaaaatttgctacttttggatgcttaaacaatgtcctaagggcacttgttagcattttc 7984712  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 365
Target Start/End: Original strand, 40026 - 40191
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaattt 299  Q
    ||||||||| ||||||  ||||||||||| |||| ||  ||||||| |||||| | ||||||||| ||||||| || ||||||| |||| ||| ||||||    
T  40026 taacaagtgccctaaggacattgtttaaggaacccacataaagaaattttgtcttgaaaatacaaatcaaacacatgtaaaagtcataactatgcaattt 40125  T
Q  300 ccaagctaaaaactactaattttggatacttaaacaataccctaagagtacttgttagcattttcc 365  Q
     ||   |||||  ||||  |||||||| |||||||||| ||||||| | |||| ||| ||||||||    
T  40126 tcattgtaaaacttactgcttttggatgcttaaacaatgccctaagtgcacttcttaacattttcc 40191  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 6100812 - 6100730
Alignment:
Q  190 agggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||| ||||||||||||| |||||| |||||||||||| |||| || ||| |||| | |||| | |||||||| ||||||||    
T  6100812 agggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaggaaattatgtcttgaaaatacatgtcaaaca 6100730  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 602
Target Start/End: Complemental strand, 5655374 - 5655338
Alignment:
Q  566 gtcctcgtgagcttagctcagccggtagggacaatac 602  Q
    |||||||||||||||||||||  ||||||||||||||    
T  5655374 gtcctcgtgagcttagctcagttggtagggacaatac 5655338  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 97931 - 97830
Alignment:
Q  189 aagggtgttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaag-aaagtttgtccttaaaatacaagtcaaacatatataaaagtaata 287  Q
    ||||||| || ||||||||| |||||| |||||||||||| |||| | |||||| ||| |||||| |  |||||||||||||||| | | ||||||||||    
T  97931 aagggtgatgctaacaagtgccctaagggcattgtttaagcaaccca-taaaagcaaattttgtcttggaaatacaagtcaaacacagacaaaagtaata 97833  T
Q  288 att 290  Q
    |||    
T  97832 att 97830  T

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Target: scaffold0265 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 3677 - 3598
Alignment:
Q  204 aagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagt 283  Q
    |||| |||||||  |||||||||||||| |||| | |||||| |||||| | ||||||||||||| | | ||||||||||    
T  3677 aagtctcctaaggacattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcatatacatataaaagt 3598  T

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Target: scaffold0265; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 8566 - 8487
Alignment:
Q  204 aagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagt 283  Q
    |||| |||||||  |||||||||||||| |||| | |||||| |||||| | ||||||||||||| | | ||||||||||    
T  8566 aagtctcctaaggacattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcatatacatataaaagt 8487  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 19413 - 19509
Alignment:
Q  200 taacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaacatatataaaagtaataattatacaa 296  Q
    ||||||||||||||||  ||||||||||| |  | |||  |||||| ||| || | |||| | |||||||||| || ||||||||||||||| ||||    
T  19413 taacaagtgtcctaaggacattgtttaaggattccactccaagaaattttatcttgaaaacataagtcaaacacatgtaaaagtaataattacacaa 19509  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 67429 - 67389
Alignment:
Q  330 taaacaataccctaagagtacttgttagcattttccataaa 370  Q
    ||||||||||||||| | ||||||||| |||||||||||||    
T  67429 taaacaataccctaaaaatacttgttaacattttccataaa 67389  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 434016 - 433940
Alignment:
Q  196 ttgttaacaagtgtcctaagagcattgtttaagaaacctactaaaagaaagtttgtccttaaaatacaagtcaaaca 272  Q
    ||||||||||||  | |||| ||||||||||||||||| || |||| ||| | |||| | |||||| ||||||||||    
T  434016 ttgttaacaagtaccttaagggcattgtttaagaaacccacaaaaaaaaattatgtcttgaaaatataagtcaaaca 433940  T

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