View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2549_low_4 (Length: 351)

Name: NF2549_low_4
Description: NF2549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2549_low_4
NF2549_low_4
[»] chr5 (1 HSPs)
chr5 (29-338)||(6705303-6705612)
[»] chr3 (7 HSPs)
chr3 (32-334)||(21566226-21566524)
chr3 (32-334)||(39685787-39686085)
chr3 (32-263)||(44430700-44430931)
chr3 (32-334)||(13839904-13840202)
chr3 (32-286)||(53813937-53814186)
chr3 (117-165)||(11423435-11423483)
chr3 (186-252)||(24902167-24902233)
[»] chr6 (4 HSPs)
chr6 (43-334)||(25403199-25403486)
chr6 (95-249)||(2030052-2030206)
chr6 (32-85)||(34131300-34131353)
chr6 (32-71)||(2029989-2030028)
[»] chr2 (1 HSPs)
chr2 (32-338)||(942414-942716)
[»] chr1 (4 HSPs)
chr1 (40-334)||(49030829-49031118)
chr1 (182-334)||(28445846-28445994)
chr1 (117-252)||(48957010-48957145)
chr1 (32-83)||(28445795-28445846)
[»] scaffold0246 (1 HSPs)
scaffold0246 (51-338)||(2026-2309)
[»] chr4 (4 HSPs)
chr4 (39-331)||(628697-628985)
chr4 (200-334)||(51719153-51719283)
chr4 (95-226)||(38653298-38653429)
chr4 (114-155)||(42704950-42704991)
[»] scaffold0262 (1 HSPs)
scaffold0262 (32-252)||(8873-9093)
[»] chr8 (2 HSPs)
chr8 (39-308)||(9387093-9387358)
chr8 (117-252)||(12947479-12947613)
[»] chr7 (2 HSPs)
chr7 (187-334)||(41799148-41799291)
chr7 (114-189)||(1326623-1326698)
[»] scaffold0041 (1 HSPs)
scaffold0041 (184-334)||(24070-24216)
[»] scaffold0251 (1 HSPs)
scaffold0251 (114-155)||(16789-16830)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 338
Target Start/End: Original strand, 6705303 - 6705612
Alignment:
Q  29 tgtttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccagg 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6705303 tgtttctaccgtgtatcccatcctctcatcgtcaaccctgctctagagcatgacattgtcatgccgagacctgtgtaccaggatattcttgttgactagg 6705402  T
Q  129 agtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccact 228  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||    
T  6705403 agtgggccatacatcctcccgatccattgcaggtcatcaacagcatgagagacagagtggagcatgcgatgcagatttcagaggtggtttcaaatccact 6705502  T
Q  229 cttctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatga 328  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6705503 cttctttggcattttggagggccttcggaccgattgattataacgtgtttgaccatcagcaggtttcgaggaggaggtctaggagtcatagtccgcatga 6705602  T
Q  329 gcagcaacag 338  Q
    ||||||||||    
T  6705603 gcagcaacag 6705612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 334
Target Start/End: Original strand, 21566226 - 21566524
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    ||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  21566226 ttctaccgtgtatgccatcctcttatcgtcaaccctgctcaagagcctgacattttcatgccgagacctgtctaccaggatattcttgttgaccaggagt 21566325  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||  ||||||||||||||||| |||||||| |||||||||||| ||||||| ||    
T  21566326 gggccagacatcctcctgatccattgcaagtcatcaacaacatgagaggcagagtggagcatgcgatgcagattcctgaggtggtttcaaatccactttt 21566425  T
Q  232 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 331  Q
    |||  |||||||||||||||| | || |    |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  21566426 cttcagcattttggagggcctacagacc----gattatagcgtgtttgaccatcagcaggttctgaggaggaggtctaggagtcatagtccacatgagca 21566521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 32 - 334
Target Start/End: Complemental strand, 39686085 - 39685787
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  39686085 ttctaccgtgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcgtgccgagacctgtgtaccaggatattcatgttgaccaggagt 39685986  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    ||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| || ||||||||||||||||||| | ||||||||||    
T  39685985 gggtcagacatcctcccgatccattgcaggtcatcaacaacatcagaggtagagtggagcatgccatgcagattccagaggtggttttaaatccactctt 39685886  T
Q  232 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 331  Q
    |||| |||| |||||| |||| || | |    |||||||  ||||||||| ||||| |||| |||||||||||||||||||||||||| ||||| |||||    
T  39685885 ctttagcatcttggagagcctccgaacc----gattatagcgtgtttgacgatcagtaggtaccgaggaggaggtctaggagtcatagcccgcaggagca 39685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 32 - 263
Target Start/End: Complemental strand, 44430931 - 44430700
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44430931 ttctaccgtgtatcccatcctctcatcgtcaaccctgctccatagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgactaggagt 44430832  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    |||||||||||||||||||||||||||||||||| | || ||| ||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  44430831 gggccagacatcctcccgatccattgcaggtcatcagcagcattagaggcagagtggagcatgcgatgcagattccagaggtggtttcaaatccactctt 44430732  T
Q  232 ctttggcattttggagggccttcggatcgatt 263  Q
    |||  |||| ||||||||||| |||| |||||    
T  44430731 cttcagcatcttggagggcctccggaccgatt 44430700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 32 - 334
Target Start/End: Original strand, 13839904 - 13840202
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  13839904 ttctaccgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctatgtaccaggatattcttgttgaccagtagt 13840003  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    |||| |||||||||||||||||||| ||| |||| | || ||| |||   | |||| |||||||||| || |||| ||||||||||||| ||| ||| ||    
T  13840004 gggctagacatcctcccgatccattccagatcatcagcagcattagaagcatagtgtagcatgcgatgcacattcgagaggtggtttcaaatctactatt 13840103  T
Q  232 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 331  Q
    |||  |||| ||||| ||||| | || |    ||||| |  ||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  13840104 cttcagcatcttggaaggcctccagacc----gattacagcgtgtttgacgatcagcaggttccaaggaagaggtctaggagtcatagtccgcaggagca 13840199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 32 - 286
Target Start/End: Original strand, 53813937 - 53814186
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    |||||| ||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  53813937 ttctatagtgtatctcctcctctcatcgtcaaccttgctccagagcctgacattgtcatgccgagacctgtctactaggatattattgttgaccaggagt 53814036  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    ||||||||||||||||| |||||||||||||||| | || ||||||||| ||||||||||||||||| ||||||| |||||||| |||| ||||| ||||    
T  53814037 gggccagacatcctcccaatccattgcaggtcatcagcagcatgagagacagagtggagcatgcgatgcagattctagaggtgg-ttcaaatccattctt 53814135  T
Q  232 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatca 286  Q
    ||||||||||||||||||||| | || |    ||||||| |||||||||||||||    
T  53814136 ctttggcattttggagggcctccagacc----gattatagtgtgtttgaccatca 53814186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 11423483 - 11423435
Alignment:
Q  117 ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcat 165  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  11423483 ttgttgagcaggagtgggccagacatcctcccgatccattccaggtcat 11423435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 24902167 - 24902233
Alignment:
Q  186 tggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggcct 252  Q
    |||||||||| ||  ||||||  |||||||||||| ||||||| || ||| ||||||||||||||||    
T  24902167 tggagcatgcaatggagattcttgaggtggtttcaaatccactattttttagcattttggagggcct 24902233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 43 - 334
Target Start/End: Original strand, 25403199 - 25403486
Alignment:
Q  43 atcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccagacat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||    
T  25403199 atcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtctaccaggaaattcttgttgaccaagagtggaccagacat 25403298  T
Q  143 cctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattt 242  Q
    |||||||| |||||||||||||| | |||||||||||| ||||||||||||| ||| ||||||||||||||||||||  |||||||||||||   ||| |    
T  25403299 cctcccgacccattgcaggtcatcagcaacatgagagacagagtggagcatgtgatgcagattccagaggtggtttctaatccactcttcttcaacatct 25403398  T
Q  243 tggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 334  Q
    | |||||| | |  | |    |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  25403399 tagagggcatccaaacc----gattataacgtgtttgacgatcagcaggttccgaggaggaggtataggagtcatagtccgcaggagtagca 25403486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 2030052 - 2030206
Alignment:
Q  95 agacctgtgtaccaggatattcttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatg 194  Q
    |||||||| ||||| ||  || ||||||| |||||||||| || ||||||||| ||||||||||||||||| |||||||||||||   ||||||||||||    
T  2030052 agacctgtctaccaagaggttattgttgagcaggagtgggtcaaacatcctcctgatccattgcaggtcatcaacaacatgagagtccgagtggagcatg 2030151  T
Q  195 cgatacagattccagaggtggtttcatatccactcttctttggcattttggaggg 249  Q
    ||||  ||||||||||||||| |||| |||||||||| ||   ||||||||||||    
T  2030152 cgatggagattccagaggtggcttcaaatccactctttttcaacattttggaggg 2030206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 34131300 - 34131353
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacatt 85  Q
    ||||| ||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  34131300 ttctaccgtgtatcccatcctcttatcgtcaaccctcctccagagcctgacatt 34131353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 2029989 - 2030028
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctc 71  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  2029989 ttctaccgtgtatcccatcctcttatcgtcaaccctgctc 2030028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 32 - 338
Target Start/End: Original strand, 942414 - 942716
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  942414 ttctaccgtgtatcccatcctctcatcgtcaaccatgctccagagcctgacattgtcatgccgaggcctgtctaccaggatattcttgttgaccaggagt 942513  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||||||||   ||||||||||    
T  942514 gggctagacatcctcccgaccctttgcaggtcatcaacaacatgagaggcagagtggagcatgcgatgcaaattccagaggtggtttttaatccactctt 942613  T
Q  232 ctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 331  Q
    |||   ||| || |||||||| | || |    |||||||  ||||||||| |||| || ||||||||||||||||||||||||||||||| ||| |||||    
T  942614 cttcaacatcttagagggcctccagacc----gattatagcgtgtttgacgatcaacaagttccgaggaggaggtctaggagtcatagtctgcaggagca 942709  T
Q  332 gcaacag 338  Q
     ||||||    
T  942710 acaacag 942716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 40 - 334
Target Start/End: Complemental strand, 49031118 - 49030829
Alignment:
Q  40 tgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccaga 139  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  49031118 tgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcatgctgagacctgtctaccaggatattcttattgaccaggagcgggccaga 49031019  T
Q  140 catcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggca 239  Q
    ||||||||||| |||||||| ||||| | || ||||||||  ||||||||||||||||| ||||||||||||||||||||  |||||||||||||   ||    
T  49031018 catcctcccgacccattgcatgtcatcagcagcatgagaggcagagtggagcatgcgatccagattccagaggtggtttctaatccactcttcttcaaca 49030919  T
Q  240 ttttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 334  Q
    | || |||||||| |||| |    |||||||  ||||||||| ||||||||||| |||||||||||||||||||||||| |||||| || |||||    
T  49030918 tcttagagggcctccggacc----gattatagcgtgtttgacgatcagcaggtt-cgaggaggaggtctaggagtcataatccgcaggaccagca 49030829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 182 - 334
Target Start/End: Original strand, 28445846 - 28445994
Alignment:
Q  182 agagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgac 281  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||| |    |||||||  |||||||||    
T  28445846 agagtgaagcatgcgatgcagattccagaggtggtttcaaatccactcttctttgacattttggagggcctctggacc----gattatagcgtgtttgac 28445941  T
Q  282 catcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 334  Q
    |||||||| |||||||||| ||||||||||||||||| |||||| ||| ||||    
T  28445942 catcagcatgttccgaggacgaggtctaggagtcatattccgcaggagtagca 28445994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 48957010 - 48957145
Alignment:
Q  117 ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggt 216  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||  | |||||||||  ||||  ||||||||||||||||    
T  48957010 ttgttgagcaggagtgggctagacatcctcccgatccattgcaggtcatcaacagcatgagagtcaaagtggagcagacgatggagattccagaggtggt 48957109  T
Q  217 ttcatatccactcttctttggcattttggagggcct 252  Q
    |||| |||||||||| ||  ||||||||||||||||    
T  48957110 ttcacatccactctttttcagcattttggagggcct 48957145  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 28445795 - 28445846
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgaca 83  Q
    ||||| |||||||||||||||||||||||  ||||||||| || ||||||||    
T  28445795 ttctaccgtgtatcccatcctctcatcgttgaccctgctccagcgcctgaca 28445846  T

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Target: scaffold0246 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 51 - 338
Target Start/End: Original strand, 2026 - 2309
Alignment:
Q  51 ctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccagacatcctcccga 150  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2026 ctctcatcgtcaaccctgctccagaacctgacattgtcatgccgagacctgtctaccaggatattcttgttgaccaggagtgggccagacatcctcccga 2125  T
Q  151 tccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggc 250  Q
     || ||||||||||| |||| ||||||||  ||||||||||||| |||  ||||||||| |||||||||  ||||| |||||||  |||| || ||||||    
T  2126 ccctttgcaggtcatcaacagcatgagaggcagagtggagcatgtgatgaagattccaggggtggtttctaatccattcttcttcagcatcttagagggc 2225  T
Q  251 cttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagcaacag 338  Q
    || |||| |||||    |||  ||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||    
T  2226 ctccggaccgatt----atagcgtgtttgacgatcagcaggttccgaggaggaagtctaggggtcattgtccgcaggagcagcaacag 2309  T

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Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 628985 - 628697
Alignment:
Q  39 gtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccag 138  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||  | ||||||||||||||||||||| || ||||||||||    
T  628985 gtgtatcccatcctctcatcgtcaaccctgctccagagcctgacattgtcatgtcaagacccttctaccaggatattcttgttgactagtagtgggccag 628886  T
Q  139 acatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggc 238  Q
    |||||||| ||| || |||||||||||   || ||||||||  ||| ||||||||||||| ||||||||||||||||||||  |||||||||||||  ||    
T  628885 acatcctctcgaccctttgcaggtcatccgcagcatgagaggcagattggagcatgcgatgcagattccagaggtggtttctaatccactcttcttcagc 628786  T
Q  239 attttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 331  Q
    |  |||||||| || |||| |    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  628785 aacttggaggggctccggacc----gattatagcgtgtttgacgatcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagca 628697  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 51719153 - 51719283
Alignment:
Q  200 cagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgagg 299  Q
    ||||||||||||||||||||| |||||||||||||  |||| ||||||||||| |||| |||||    |||  ||||||||| |||| ||||||||||||    
T  51719153 cagattccagaggtggtttcaaatccactcttcttaagcatcttggagggcctccggaccgatt----atagcgtgtttgacgatcatcaggttccgagg 51719248  T
Q  300 aggaggtctaggagtcatagtccgcatgagcagca 334  Q
    ||||||||||||| ||||||||| || ||||||||    
T  51719249 aggaggtctaggactcatagtccacaggagcagca 51719283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 38653298 - 38653429
Alignment:
Q  95 agacctgtgtaccaggatattcttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatg 194  Q
    |||||||| ||||||||  || ||||||| || ||||||||||||||||||||||| ||||| ||| ||||   |||||| ||||  ||| ||| |||||    
T  38653298 agacctgtctaccaggaggttattgttgagcaagagtgggccagacatcctcccgacccattccagatcatcggcaacatcagagccagactggcgcatg 38653397  T
Q  195 cgatacagattccagaggtggtttcatatcca 226  Q
    | ||  ||||||| |||| ||||||| |||||    
T  38653398 caatggagattcctgaggaggtttcaaatcca 38653429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 42704991 - 42704950
Alignment:
Q  114 ttcttgttgaccaggagtgggccagacatcctcccgatccat 155  Q
    |||||||||| ||| |||||||||||||||||||||| ||||    
T  42704991 ttcttgttgagcagcagtgggccagacatcctcccgacccat 42704950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 9093 - 8873
Alignment:
Q  32 ttctatcgtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagt 131  Q
    ||||||| |||||| ||||||||  |||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9093 ttctatcatgtatcacatcctcttctcgtcaacactgctcaagagtctgacattgtcatgccgagacctgtctaccaggatattcttgttgaccaggagt 8994  T
Q  132 gggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactctt 231  Q
    |||||||||||| ||||||||||||||||||||||| || |||| |||  || ||||| |||||||| ||||||||  ||||||||||| ||||||||||    
T  8993 gggccagacatcatcccgatccattgcaggtcattaccagcatgcgaggcagggtggaacatgcgatgcagattccgaaggtggtttcaaatccactctt 8894  T
Q  232 ctttggcattttggagggcct 252  Q
    ||| |||||||||||||||||    
T  8893 cttcggcattttggagggcct 8873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 308
Target Start/End: Original strand, 9387093 - 9387358
Alignment:
Q  39 gtgtatcccatcctctcatcgtcaaccctgctctagagcctgacattgtcatgccgagacctgtgtaccaggatattcttgttgaccaggagtgggccag 138  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  9387093 gtgtattccatcctctcatcatcaacccagctccagagcctgacattctcatgtcaagacctgtctaccaggatattcttgttgaccaggagtaggccag 9387192  T
Q  139 acatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggc 238  Q
    ||||||| |||| |||||||||||||| | || ||||||||  |||||||||||||||||  |||||||||||||||||||  ||  |||||||||  ||    
T  9387193 acatccttccgacccattgcaggtcatcagcagcatgagaggcagagtggagcatgcgatggagattccagaggtggtttctaatttactcttcttcagc 9387292  T
Q  239 attttggagggccttcggatcgattgattataatgtgtttgaccatcagcaggttccgaggaggaggtct 308  Q
    || || |||||| | | || |    |||||||  ||||||||| |||| |||||||||||||||||||||    
T  9387293 atcttagagggcatccagacc----gattatagcgtgtttgacaatcaacaggttccgaggaggaggtct 9387358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 12947479 - 12947613
Alignment:
Q  117 ttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtggagcatgcgatacagattccagaggtggt 216  Q
    ||||||| |||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||  ||||||||||||| |||   |||| |||||||||     
T  12947479 ttgttgagcaggagtgggtcagacatcctcccgatccattgcatgtcatcaacagcatgaaagtcagagtggagcatgtgatggggatttcagaggtggc 12947578  T
Q  217 ttcatatccactcttctttggcattttggagggcct 252  Q
    |||| || ||||||| ||   |||||||||||||||    
T  12947579 ttcaaat-cactctttttcaacattttggagggcct 12947613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 187 - 334
Target Start/End: Complemental strand, 41799291 - 41799148
Alignment:
Q  187 ggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgaccatca 286  Q
    |||||||||||| ||||||||||| ||||||||  |||||||||||||  |||| || |||||||| ||||||||||    |||  ||||||||| ||||    
T  41799291 ggagcatgcgatgcagattccagatgtggtttctaatccactcttcttgagcatcttagagggcctccggatcgatt----atagcgtgtttgacgatca 41799196  T
Q  287 gcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 334  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41799195 gcaggttccgaggaggaggtctaggagtcatagtccgcaagagcagca 41799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 1326698 - 1326623
Alignment:
Q  114 ttcttgttgaccaggagtgggccagacatcctcccgatccattgcaggtcattaacaacatgagagatagagtgga 189  Q
    |||||||||| ||| |||||||||||||||||||||| ||||  ||| |||| | |||||| ||||  ||||||||    
T  1326698 ttcttgttgagcagcagtgggccagacatcctcccgacccatatcagatcatcagcaacatcagagccagagtgga 1326623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 184 - 334
Target Start/End: Complemental strand, 24216 - 24070
Alignment:
Q  184 agtggagcatgcgatacagattccagaggtggtttcatatccactcttctttggcattttggagggccttcggatcgattgattataatgtgtttgacca 283  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||  |||| || |||||||| |||| |||||    |||  ||||||||| |    
T  24216 agtggagcatgcgatgcagattccagaggtggtttctaatccactcttcttcagcatcttagagggcctccggaacgatt----atagcgtgtttgacga 24121  T
Q  284 tcagcaggttccgaggaggaggtctaggagtcatagtccgcatgagcagca 334  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  24120 tcagcaggttccgaggaggaggtataggagtcatagtccgcaggagcagca 24070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 16830 - 16789
Alignment:
Q  114 ttcttgttgaccaggagtgggccagacatcctcccgatccat 155  Q
    |||||||||| ||| |||||||||||||||||||||| ||||    
T  16830 ttcttgttgagcagcagtgggccagacatcctcccgacccat 16789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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