View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2549_low_5 (Length: 309)
Name: NF2549_low_5
Description: NF2549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2549_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 25188932 - 25189151
Alignment:
| Q |
13 |
cagataattgtttgacacactattatgtgctatgtttatgataagaaatgacatgatatgaaatgatataagttcagttataagtaacgacgatttaggt |
112 |
Q |
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| T |
25188932 |
cagataattgtttgacacactattatatgctatgtttatgataagaaatcacatgatatgtaatgatataagttcagttataagtaacgacgatttaggt |
25189031 |
T |
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| Q |
113 |
ttgcacaatcgtcttaggcaggtatgagttcacacacgtataatcaaccaaacagttgtgttgcagtcacgtgataaccgttgaagatctctctgtttag |
212 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
25189032 |
ttgcacgatcgtcttaggcaggtatgagttcacacacgtataatcaaccaaacggttgtgttgtagtcacgtgataaccattgaagatctctctgtttag |
25189131 |
T |
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| Q |
213 |
ttttatgtttttgatgatgt |
232 |
Q |
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|||||||||||||||||||| |
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| T |
25189132 |
ttttatgtttttgatgatgt |
25189151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 29791181 - 29791361
Alignment:
| Q |
13 |
cagataattgtttgacacactattatgtgctatgtttatgataagaaatgacatgatatgaaatgatataagttcagttataagtaacgacgatttaggt |
112 |
Q |
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| T |
29791181 |
cagataattatatgacacgcctttatattctatgcttatgacaagaaatgatatgatacgaaacaatgtaagttaagttataagtgaagacgatctaggc |
29791280 |
T |
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| Q |
113 |
ttgcacaatcgtcttaggcaggtatgagttcacacacgtataatcaaccaaacagttgtgttgcagtcacgtgataaccgt |
193 |
Q |
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| T |
29791281 |
ttgcacgatcgtcttaggtatgtacgagttcacacacgtataatcaaccaatcagttgtattgcagacacgtggtaaccgt |
29791361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 11245662 - 11245815
Alignment:
| Q |
44 |
atgtttatgataagaaatgacatgatatgaaatgatat-----aagttcagttataagtaacgacgatttaggtttgcacaatcgtcttaggcaggtatg |
138 |
Q |
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|||||||||||||||||| | |||||||||||||| || ||||| | || |||| |||||| | |||| |||||| ||||||||||| | | ||| |
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| T |
11245662 |
atgtttatgataagaaataa-atgatatgaaatgacatgacacaagtttaactagaagtgacgacggtctaggcttgcacgatcgtcttaggaatgcatg |
11245760 |
T |
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| Q |
139 |
agttcacacacgtataatcaaccaaacagttgtgttgcagtcacgtgataaccgt |
193 |
Q |
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| T |
11245761 |
agttcacacacgtatcatcaaccaaccggttgtattgtagacatgtggtaaccgt |
11245815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 21218206 - 21218285
Alignment:
| Q |
114 |
tgcacaatcgtcttaggcaggtatgagttcacacacgtataatcaaccaaacagttgtgttgcagtcacgtgataaccgt |
193 |
Q |
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||||| ||||||||||| || |||||||||||||||||||||||| ||| | ||||| ||| |||||||| ||||||| |
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| T |
21218206 |
tgcacgatcgtcttaggtagtcatgagttcacacacgtataatcaatcaatcggttgtattgtagtcacgttgtaaccgt |
21218285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 13079507 - 13079545
Alignment:
| Q |
194 |
tgaagatctctctgtttagttttatgtttttgatgatgt |
232 |
Q |
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|||||| |||| ||||||||||||||||||||||||||| |
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| T |
13079507 |
tgaagacctctttgtttagttttatgtttttgatgatgt |
13079545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 9340673 - 9340722
Alignment:
| Q |
136 |
atgagttcacacacgtataatcaaccaaacagttgtgttgcagtcacgtg |
185 |
Q |
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|||||||||||||||||||||||||| || ||||||||| || |||||| |
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| T |
9340673 |
atgagttcacacacgtataatcaaccgaatggttgtgttgtagacacgtg |
9340722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 21324265 - 21324322
Alignment:
| Q |
136 |
atgagttcacacacgtataatcaaccaaacagttgtgttgcagtcacgtgataaccgt |
193 |
Q |
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||||||||||||| |||||||||| ||||| |||||||| || ||| |||||||||| |
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| T |
21324265 |
atgagttcacacatgtataatcaatcaaacggttgtgttatagacacatgataaccgt |
21324322 |
T |
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