View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2549_low_7 (Length: 259)
Name: NF2549_low_7
Description: NF2549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2549_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 6472573 - 6472442
Alignment:
| Q |
31 |
gaacttgggaagagcatcgttagagaaaagtcaatgaaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaa |
130 |
Q |
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| T |
6472573 |
gaacttgggaagagcatcgttagagaaaaatcaatgaaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaa |
6472474 |
T |
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| Q |
131 |
acatggtaaagtagttattataattaaattat |
162 |
Q |
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| T |
6472473 |
acatggtaaagtagttattataataaaattat |
6472442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 6471687 - 6471584
Alignment:
| Q |
156 |
aaattattgctcgccatttttatattatccaaaagagcatatgaaaataagttaaaaagaacttgtggacatgtttccataaactctcataaatagactt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6471687 |
aaattattgctcgccatttttatattatccaaaagagcatatgaaaatcagttaaaaagaacttgtggacatgtttccataaactctcataaatagtctt |
6471588 |
T |
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| Q |
256 |
tctt |
259 |
Q |
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|||| |
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| T |
6471587 |
tctt |
6471584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 31245904 - 31246049
Alignment:
| Q |
31 |
gaacttgggaagagcatcgttagagaaaagtcaatgaaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaa |
130 |
Q |
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||||| || ||||| |||||||| ||||| ||| ||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
31245904 |
gaactaggcaagagtatcgttagggaaaaatcacccaaagaaccaagaaagtggaacaggatgtgggactacaaggatgtccacaatgttatatcagaaa |
31246003 |
T |
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| Q |
131 |
acatggtaaagtagttattataattaaattattgctcgccattttt |
176 |
Q |
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| T |
31246004 |
acatggtaaaatagttattaaaataagattattgcttaccattttt |
31246049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 13609994 - 13610103
Alignment:
| Q |
67 |
aaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaaacatggtaaagtagttattataattaaattattgct |
166 |
Q |
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||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||| ||||| |||||||| || |||| ||||||||||||||| |
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| T |
13609994 |
aaagaaccaagaaagtggaacaggttgtgggaccacaaggatgtccacaatgttatctcggaaaaaatggtaaaataattatcgaaattaaattattgct |
13610093 |
T |
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| Q |
167 |
cgccattttt |
176 |
Q |
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|||||||||| |
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| T |
13610094 |
cgccattttt |
13610103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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