View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2550_low_1_N (Length: 478)
Name: NF2550_low_1_N
Description: NF2550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2550_low_1_N |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 45 - 478
Target Start/End: Complemental strand, 51857120 - 51856688
Alignment:
| Q |
45 |
caccacagacaagaacaaatgaacattaacctctctcactacaagaaaaatttcatatccaaatttatctttccttctgattgaaattgattggtaagtg |
144 |
Q |
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| T |
51857120 |
caccacagacaagaacaaatgaacattaacctctctcactacaagaaaaatttcatatccaaatttatctttcctgctgattgaaatcgattggtaagtg |
51857021 |
T |
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| Q |
145 |
gtaacccttcatttatcttttgttccatatcccaattgaaacttttttcctttcaatttctttttattgctttctagatccaacgatgtgttgcatgata |
244 |
Q |
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| T |
51857020 |
gtaacccttcatttatcttttgttccatatcccaattgaaacttttttcctttcaatt-ctttttattgctttctagatccaacgatgcgttgcatgata |
51856922 |
T |
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| Q |
245 |
atctttattatgttttccatttgttgttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggaccctt |
344 |
Q |
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| T |
51856921 |
atctttattatgttttccatttgttgttattttgaagttccaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggaccctt |
51856822 |
T |
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| Q |
345 |
cattatcatgtagtacaggttttcttctagatctagttccctttctttattttccctttttcttatttgtgtcgtgttaagaaaaattaaagtttaattt |
444 |
Q |
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| T |
51856821 |
cattatcatgtagtacaggttatcttctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttaattt |
51856722 |
T |
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| Q |
445 |
ttattattaaagtttgaagggtaacaagccactc |
478 |
Q |
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| T |
51856721 |
ttattattaaagtttgaagggtaacaagccactc |
51856688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 87 - 478
Target Start/End: Complemental strand, 8946112 - 8945732
Alignment:
| Q |
87 |
aagaaaaatttcatatccaaatttatctttccttctgattgaaattgattggtaagtggtaacccttcatttatcttttgttccatatcccaattgaaac |
186 |
Q |
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| T |
8946112 |
aagaaaaatttcatatccaaatttatctttcctgctgattgaaatcgattgctaagtggtaacccttcatttatcttttgttccatatcccaattgaaac |
8946013 |
T |
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| Q |
187 |
ttttttcctttcaatttctttttattgctttctagatccaacgatgtgttgcatgataatctttattatgttttccatttgttgttattttgaagtttca |
286 |
Q |
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| T |
8946012 |
ttttttcctttcaatttcattttattgctttctagatccaacgatgtgttgcatgataatctttattatgtt-----------gttattttgaagtttca |
8945924 |
T |
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| Q |
287 |
attataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacaggttttcttctagatctagttccct |
386 |
Q |
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| T |
8945923 |
attataacggcttcaaagcacatcgtgaaggagctaaatgatttttagaacgacccttcattatcatgtagtacaggttatcttctagatctagttccct |
8945824 |
T |
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| Q |
387 |
ttctttattttccctttttcttatttgtgtcgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaacaagccactc |
478 |
Q |
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| T |
8945823 |
ttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttgatttttattattaaagtttgaagggtaacaagccactc |
8945732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 245 - 478
Target Start/End: Complemental strand, 43263171 - 43262937
Alignment:
| Q |
245 |
atctttattatgttttccatttgttgttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggaccctt |
344 |
Q |
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| T |
43263171 |
atctttattatgtttttcatttgttgttattttgaagtttcaattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgtagaaggaccctt |
43263072 |
T |
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| Q |
345 |
cattatcatgtagtacaggttttcttctagatctagttccctttctttattttccctttttcttatttgtgtcgtgtt-aagaaaaattaaagtttaatt |
443 |
Q |
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| T |
43263071 |
caacatcatgcagtacaggttatcttctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaaaaaaaaagaaaagtttaatt |
43262972 |
T |
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| Q |
444 |
tttattattaaagtttgaagggtaacaagccactc |
478 |
Q |
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| T |
43262971 |
tttattattaaagtttgaagggtaacaatccactc |
43262937 |
T |
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