View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2550_low_2 (Length: 309)
Name: NF2550_low_2
Description: NF2550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2550_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 34764044 - 34763772
Alignment:
| Q |
15 |
atcataggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccac |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34764044 |
atcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatcttcatcttttggataacccacttcttcaccac |
34763945 |
T |
|
| Q |
115 |
actcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763944 |
actcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttt |
34763845 |
T |
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| Q |
215 |
tccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatga |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763844 |
tccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatga |
34763772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 34780068 - 34780348
Alignment:
| Q |
15 |
atcataggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccac |
114 |
Q |
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|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34780068 |
atcaaaggctcttcgccaccttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttcttcaccac |
34780167 |
T |
|
| Q |
115 |
actcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttt |
214 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780168 |
actcttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttt |
34780267 |
T |
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| Q |
215 |
tccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780268 |
tccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctg |
34780348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 34756068 - 34755796
Alignment:
| Q |
15 |
atcataggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccac |
114 |
Q |
| |
|
|||| |||| |||||||| ||||| ||||| || || || ||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |
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| T |
34756068 |
atcaaaggctcttcgccaccttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatcttcaccttttggataaccctcttcttcaccac |
34755969 |
T |
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| Q |
115 |
actcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttt |
214 |
Q |
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|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||| |
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| T |
34755968 |
actcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcaacccctgacttgtttaaacttt |
34755869 |
T |
|
| Q |
215 |
tccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatga |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34755868 |
tccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatga |
34755796 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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