View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2550_low_2_N (Length: 418)

Name: NF2550_low_2_N
Description: NF2550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2550_low_2_N
NF2550_low_2_N
[»] chr8 (6 HSPs)
chr8 (26-404)||(25890957-25891335)
chr8 (261-404)||(37718973-37719116)
chr8 (26-78)||(18309115-18309167)
chr8 (154-226)||(37718866-37718938)
chr8 (328-391)||(42649412-42649475)
chr8 (324-404)||(4310705-4310785)
[»] chr7 (11 HSPs)
chr7 (213-404)||(17504428-17504619)
chr7 (26-217)||(17506963-17507154)
chr7 (26-217)||(17546060-17546251)
chr7 (213-404)||(17548595-17548786)
chr7 (48-303)||(15645130-15645385)
chr7 (261-404)||(551424-551567)
chr7 (248-404)||(6343511-6343667)
chr7 (311-387)||(45165447-45165523)
chr7 (154-229)||(551599-551674)
chr7 (324-387)||(39694660-39694723)
chr7 (342-392)||(29557447-29557497)
[»] chr3 (1 HSPs)
chr3 (67-404)||(14853834-14854171)
[»] chr6 (5 HSPs)
chr6 (270-404)||(18588487-18588621)
chr6 (48-229)||(7956698-7956879)
chr6 (273-404)||(7956539-7956670)
chr6 (324-404)||(15602513-15602593)
chr6 (132-230)||(15602321-15602419)
[»] chr1 (4 HSPs)
chr1 (26-122)||(39584909-39585005)
chr1 (324-404)||(30712750-30712830)
chr1 (151-229)||(9991072-9991150)
chr1 (319-366)||(9991241-9991292)
[»] chr4 (3 HSPs)
chr4 (324-403)||(54684799-54684878)
chr4 (324-404)||(40688256-40688336)
chr4 (311-387)||(19163065-19163141)
[»] scaffold0024 (1 HSPs)
scaffold0024 (291-364)||(87113-87186)
[»] chr2 (4 HSPs)
chr2 (322-404)||(44029077-44029159)
chr2 (201-396)||(1468062-1468257)
chr2 (324-404)||(6727648-6727728)
chr2 (324-387)||(2207710-2207773)
[»] chr5 (3 HSPs)
chr5 (324-404)||(36255968-36256048)
chr5 (64-117)||(32239707-32239760)
chr5 (151-219)||(3168581-3168649)
[»] scaffold0351 (1 HSPs)
scaffold0351 (311-366)||(12901-12956)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 26 - 404
Target Start/End: Original strand, 25890957 - 25891335
Alignment:
Q  26 gcaccacagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 125  Q
    |||||| |||||||||||||| |||||||| ||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||    
T  25890957 gcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccac 25891056  T
Q  126 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgc 225  Q
     ||||| ||||||||||||||||  ||||||||||||||||  |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||    
T  25891057 tttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgc 25891156  T
Q  226 caaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaacc 325  Q
    ||||  |||||  ||||| || || |||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||    
T  25891157 caaattaggtcggcaacctgagtaacctgcggtacctcctgagttgtgagcatataatacacagaacggccagaataaacgcctgagggatctggtaacc 25891256  T
Q  326 actgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25891257 actgccacacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctc 25891335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 404
Target Start/End: Original strand, 37718973 - 37719116
Alignment:
Q  261 ctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaa 360  Q
    |||||||| ||||||||||| ||||||   | ||||||||||  |  | |||||  | |||||||| ||||||||| |||| ||||||| ||||||||||    
T  37718973 ctcctgagttgtgagcatatcatacactccatgaacagagtagccttcggaagggcccggtaaccagtgccaaacaccatacgaaagaggctgcaaagaa 37719072  T
Q  361 acattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    |||| |   ||||| |||| ||||||| ||||||||||||||||    
T  37719073 acatcataaaataataaccgacactccgctaaaagatcctcctc 37719116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 18309167 - 18309115
Alignment:
Q  26 gcaccacagaccacagctccctaaagcaaggacacgaaagaaacaaatgacta 78  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  18309167 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 37718866 - 37718938
Alignment:
Q  154 gatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgcc 226  Q
    ||||| |||||||| |||||||||||||| ||||| ||| ||||||||||||| |  |||||||| |||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcc 37718938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 42649412 - 42649475
Alignment:
Q  328 tgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctcta 391  Q
    ||||| |||||||||||||||| |||||||||||||| |   | ||| ||||||||||||||||    
T  42649412 tgccacacatcataagaaagaggctgcaaagaaacatcagcaagtaataacctacactcctcta 42649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 4310785 - 4310705
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| ||||||||||||| || ||||||||||| ||||   | ||| |||||||||||| | | ||| ||||||||    
T  4310785 ccactgccacacatcataagaaataggctgcaaagaaatattagcaagtaataacctacactccgcaagaagctcctcctc 4310705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 213 - 404
Target Start/End: Complemental strand, 17504619 - 17504428
Alignment:
Q  213 aacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 312  Q
    |||||||||||||||||  || ||  ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17504520  T
Q  313 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17504519 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctc 17504428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 17507154 - 17506963
Alignment:
Q  26 gcaccacagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 125  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17507154 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17507055  T
Q  126 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacct 217  Q
    |||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  17507054 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 17546060 - 17546251
Alignment:
Q  26 gcaccacagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 125  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17546060 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17546159  T
Q  126 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacct 217  Q
    |||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  17546160 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 213 - 404
Target Start/End: Original strand, 17548595 - 17548786
Alignment:
Q  213 aacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 312  Q
    |||||||||||||||||  || ||  ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17548694  T
Q  313 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17548695 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctc 17548786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 48 - 303
Target Start/End: Original strand, 15645130 - 15645385
Alignment:
Q  48 aaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgcc 147  Q
    |||||||||||| || | ||||||||||  |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||||||||||    
T  15645130 aaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgatgcc 15645229  T
Q  148 aggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaaccggat 247  Q
    | ||||||||||||||| |    |||||||||||| ||||| ||| | | ||||||||| || |||| ||| ||||||||||  || || | | || ||     
T  15645230 aagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcctgag 15645329  T
Q  248 tatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaa 303  Q
    || ||||| ||||||| |||| ||||  ||||  |||||||||||||||| |||||    
T  15645330 taacctgcagtacctcgtgagttgtggtcataacatacacagaacgaacatagtaa 15645385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 551567 - 551424
Alignment:
Q  261 ctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaa 360  Q
    |||||||  ||||||||||| ||| ||   ||||||||||||| |  | ||||| || ||||||||||||||||||||| | ||| ||| ||||||||||    
T  551567 ctcctgatttgtgagcatatcatataccccacgaacagagtaaccttcggaagggtccggtaaccactgccaaacatcaaacgaaggaggctgcaaagaa 551468  T
Q  361 acattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    |||| |   | ||| |||||||||||| ||||||| ||||||||    
T  551467 acatcagaaagtaataacctacactccgctaaaagttcctcctc 551424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 404
Target Start/End: Complemental strand, 6343667 - 6343511
Alignment:
Q  248 tatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctga-aggatctggtaaccactgccaaacatcataagaaa 346  Q
    |||||||||| | |||||||   |||||||||| |||||||  |||||| |||||| |   ||| |||||| |||  ||| ||||| | |||| ||||||    
T  6343667 tatcctgcggaatctcctgattagtgagcatatcatacacaccacgaaccgagtaaccag-tgacaggatccggttgccattgccacatatcaaaagaaa 6343569  T
Q  347 gagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcctc 404  Q
    ||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  6343568 gaggctgcaaagaaacatta-gtaagtaacaacctacactcctctaaaagctcctcctc 6343511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 45165523 - 45165447
Alignment:
Q  311 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 387  Q
    |||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||   | ||| ||||||||||||    
T  45165523 aagggtctggttgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactcc 45165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  154 gatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaa 229  Q
    ||||| ||||| || |||||||||| ||| ||||| ||| ||||||||||||| | ||||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 39694660 - 39694723
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 387  Q
    ||||||||| |||||||||||||||| ||||||||||||||||   | ||| ||||||||||||    
T  39694660 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactcc 39694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 29557447 - 29557497
Alignment:
Q  342 agaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaa 392  Q
    |||||||  |||||||||||||| ||||| ||||| |||||||||||||||    
T  29557447 agaaagattctgcaaagaaacatcaagtagtaacatcctacactcctctaa 29557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 67 - 404
Target Start/End: Original strand, 14853834 - 14854171
Alignment:
Q  67 aacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggta 166  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||| |||| |   ||||||||  |||||||||||||||| |||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  167 atcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctg 266  Q
      |||||||||||||| ||||| ||| | | ||||||||| ||  ||||||| ||||||||||  |  || ||| || || || ||||||||||||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  267 agatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 366  Q
    || ||||||||||  ||||| |||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  14854034 agttgtgagcataacatacatagaacgaacaaagtaatcacctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacatta 14854133  T
Q  367 agtaataacaacctacactcctctaaaagatcctcctc 404  Q
    || | |||||  ||||||||||||||||||||||||||    
T  14854134 agaagtaacattctacactcctctaaaagatcctcctc 14854171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 18588487 - 18588621
Alignment:
Q  270 tgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagt 369  Q
    ||||||||||  |||||||||||||||||||||| | | ||| ||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||     
T  18588487 tgtgagcatagcatacacagaacgaacagagtaacctcttgatggatccggtaaccactaccacacatcataagaaagaggctgcaaagaaacattaaga 18588586  T
Q  370 aataacaacctacactcctctaaaagatcctcctc 404  Q
    | |||||||||||||||||||||||||||||||||    
T  18588587 agtaacaacctacactcctctaaaagatcctcctc 18588621  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 7956879 - 7956698
Alignment:
Q  48 aaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgcc 147  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||| ||||||    
T  7956879 aaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagatgcc 7956780  T
Q  148 aggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaa 229  Q
    | ||||||||||||||| |  |||||||||||||  ||||| ||| | | ||||||||| || |||||||| ||||||||||    
T  7956779 aagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaa 7956698  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 404
Target Start/End: Complemental strand, 7956670 - 7956539
Alignment:
Q  273 gagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaat 372  Q
    |||||||  ||||| |||||||||| ||||| |  |||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||| | | |    
T  7956670 gagcataacatacatagaacgaacaaagtaaccttctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacattatgaagt 7956571  T
Q  373 aacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| ||||||||||||||||||||||    
T  7956570 aacaacctagactcctctaaaagatcctcctc 7956539  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 15602513 - 15602593
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  15602513 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaagctcctcctc 15602593  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 15602321 - 15602419
Alignment:
Q  132 aataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaac 230  Q
    ||||||||| | ||| | |||||| ||||| || ||||||||||| ||||  ||||| ||| |||| ||||||||||  ||||| || |||||||||||    
T  15602321 aataccacgggttgctaagttagacttagtgggaaatcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatggttatgccaaac 15602419  T

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Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 39584909 - 39585005
Alignment:
Q  26 gcaccacagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggt 122  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  39584909 gcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 30712830 - 30712750
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  30712830 ccactgccacacatcataagaaagaggctgcagagaaacatta-gtaagtaacaacctacactcctctaaaagctcctcctc 30712750  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 9991072 - 9991150
Alignment:
Q  151 ttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaa 229  Q
    |||||||||||||| |   ||||||| ||||| ||||| ||| |||| | ||||||||| |||||||| ||||||||||    
T  9991072 ttagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 9991241 - 9991292
Alignment:
Q  319 ggtaaccactgccaaacatca----taagaaagagcctgcaaagaaacatta 366  Q
    |||||||||||||||||||||    |||||||||| ||||||||||||||||    
T  9991241 ggtaaccactgccaaacatcataattaagaaagaggctgcaaagaaacatta 9991292  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 54684799 - 54684878
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcct 403  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||  |||||||    
T  54684799 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaatttcctcct 54684878  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 40688256 - 40688336
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||  | ||| |||||||||||| | | ||| ||||||||    
T  40688256 ccactgccacacatcataagaaagaggctgcaatgaaacattaacaagtaataacctacactccgcaagaagctcctcctc 40688336  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 19163141 - 19163065
Alignment:
Q  311 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 387  Q
    ||||||| |||  ||||||||| ||||||||||||||||  |||||||||||||||   | ||| ||||||||||||    
T  19163141 aaggatccggttgccactgccacacatcataagaaagaggttgcaaagaaacattagcaagtaataacctacactcc 19163065  T

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Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 87186 - 87113
Alignment:
Q  291 acgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacat 364  Q
    |||||| |||||| | || | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  87186 acgaaccgagtaacctccagcaggatccggtaaccactgccaaacatcataagaaagaggctgcaaagaaacat 87113  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 44029159 - 44029077
Alignment:
Q  322 aaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    |||||||||||||||||| ||||||||| |||||| ||||||| |   | ||| |||||||||||| ||||||||||||||||    
T  44029159 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagacagtaataacctacactccgctaaaagatcctcctc 44029077  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 396
Target Start/End: Original strand, 1468062 - 1468257
Alignment:
Q  201 caccttaagaggaacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagag 300  Q
    |||||||||||| ||||| ||||||||||  | ||| |||||| |  |||||||||||| |||||||   |||||||||  |||||||  ||||||| |     
T  1468062 caccttaagaggtacctgtttatgccaaatcaagtcaacaacctgcctatcctgcggtaactcctgatcagtgagcatagcatacacaccacgaacataa 1468161  T
Q  301 taaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaaga 396  Q
    ||  |  |  | ||||| || | |||||| || |||||||||||||||| ||||||||||||||||   | ||| | |||||||||||||| ||||    
T  1468162 tacccttcgaagggatccgggagccactgtcacacatcataagaaagaggctgcaaagaaacattagcaagtaatagcctacactcctctataaga 1468257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 6727728 - 6727648
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| |||||||||||||||| ||||||||||||||||   | ||| |||||||||||| | | ||| ||||||||    
T  6727728 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcctc 6727648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 2207773 - 2207710
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 387  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||   | ||| ||||||||||||    
T  2207773 ccactgccacacatcataagaaagaggctgtaaagaaacattagcaagtaataacctacactcc 2207710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 36255968 - 36256048
Alignment:
Q  324 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 404  Q
    ||||||||| |||||||||||||||| ||||||||||||||||   | ||| |||||||||||| | | ||| ||||||||    
T  36255968 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcctc 36256048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 32239707 - 32239760
Alignment:
Q  64 agaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaa 117  Q
    ||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||    
T  32239707 agaaacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaa 32239760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 3168649 - 3168581
Alignment:
Q  151 ttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctga 219  Q
    |||| ||| |||||||||||||| ||||  || ||||||||| ||||||| ||||| | ||||||||||    
T  3168649 ttagctttcgtaggtaatcgatctcggataagccgccacgcaaaaattgaaaccttcaaaggaacctga 3168581  T

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Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 12956 - 12901
Alignment:
Q  311 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 366  Q
    ||||||| |||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  12956 aaggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 12901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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