View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2550_low_3 (Length: 271)

Name: NF2550_low_3
Description: NF2550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2550_low_3
NF2550_low_3
[»] chr4 (4 HSPs)
chr4 (1-45)||(42677705-42677749)
chr4 (1-45)||(55728699-55728743)
chr4 (8-45)||(45873116-45873153)
chr4 (8-45)||(14441129-14441166)
[»] chr7 (3 HSPs)
chr7 (3-45)||(43047755-43047797)
chr7 (11-45)||(24718022-24718056)
chr7 (8-40)||(31039014-31039046)
[»] chr1 (3 HSPs)
chr1 (3-45)||(2077484-2077526)
chr1 (8-45)||(11814706-11814743)
chr1 (9-45)||(14351175-14351211)
[»] chr5 (6 HSPs)
chr5 (8-45)||(26331218-26331255)
chr5 (8-45)||(27170282-27170319)
chr5 (8-45)||(40599992-40600029)
chr5 (11-45)||(42268902-42268936)
chr5 (8-45)||(24867206-24867243)
chr5 (8-45)||(40680880-40680917)
[»] chr3 (1 HSPs)
chr3 (8-45)||(31699232-31699269)
[»] chr2 (1 HSPs)
chr2 (8-45)||(14950836-14950873)
[»] chr8 (5 HSPs)
chr8 (11-45)||(5515298-5515332)
chr8 (8-45)||(15050163-15050200)
chr8 (8-45)||(23635817-23635854)
chr8 (8-45)||(23635865-23635902)
chr8 (8-40)||(3763046-3763078)


Alignment Details
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42677749 - 42677705
Alignment:
Q  1 attatctttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42677749 attatctttaaccaccacaaaaaccaccattaatcctcactaaaa 42677705  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 55728699 - 55728743
Alignment:
Q  1 attatctttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||    
T  55728699 attatcattaaccaccacaaaaaccaccattaatcctcaccaaaa 55728743  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 45873116 - 45873153
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  45873116 ttaaccaccacaaaaaccaccattaatcctcaccaaaa 45873153  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 14441129 - 14441166
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  14441129 ttaaccagcacaaaaaccaccattaatcctcaccaaaa 14441166  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 43047797 - 43047755
Alignment:
Q  3 tatctttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  43047797 tatcattaaccaccacaaaaaccaccattaatcctcacaaaaa 43047755  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 24718022 - 24718056
Alignment:
Q  11 accaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||||||||||||||||||||||||||| ||||    
T  24718022 accaccacaaaaaccaccattaatcctcaccaaaa 24718056  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 31039014 - 31039046
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcac 40  Q
    ||||||||||||||||||||||||| |||||||    
T  31039014 ttaaccaccacaaaaaccaccattactcctcac 31039046  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 2077526 - 2077484
Alignment:
Q  3 tatctttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  2077526 tatcattaaccaccacaaaaaccaccattaatcctcaccaaaa 2077484  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 11814706 - 11814743
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  11814706 ttaaccatcacaaaaaccaccattaatcctcaccaaaa 11814743  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 14351211 - 14351175
Alignment:
Q  9 taaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  14351211 taaccaccacaaaaaccaccattaattctcaccaaaa 14351175  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 26331255 - 26331218
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  26331255 ttaaccaccacaaaaaccaccattaatcctcaccaaaa 26331218  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 27170319 - 27170282
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  27170319 ttaaccaccacaaaaaccaccattaatcctcaccaaaa 27170282  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 40600029 - 40599992
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40600029 ttaaccaccacaaaaaccaccattaatcctcaccaaaa 40599992  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 42268936 - 42268902
Alignment:
Q  11 accaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||||||||||||||||||||||||||| ||||    
T  42268936 accaccacaaaaaccaccattaatcctcaccaaaa 42268902  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 24867243 - 24867206
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  24867243 ttaaccaacacaaaaaccaccattaatcctcaccaaaa 24867206  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 40680880 - 40680917
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  40680880 ttaaccaccacgaaaaccaccattaatcctcaccaaaa 40680917  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 31699232 - 31699269
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  31699232 ttaaccaccacaaaaaccaccattaatcctcaccaaaa 31699269  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 14950873 - 14950836
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  14950873 ttaaccaccacaaaaaccaccattaatcctcaccaaaa 14950836  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 5515298 - 5515332
Alignment:
Q  11 accaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||||||||||||||||||||||||||| ||||    
T  5515298 accaccacaaaaaccaccattaatcctcaccaaaa 5515332  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 15050200 - 15050163
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  15050200 ttaaccaccacaaaaaccatcattaatcctcaccaaaa 15050163  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23635817 - 23635854
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  23635817 ttaacctccacaaaaaccaccattaatcctcaccaaaa 23635854  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23635865 - 23635902
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcactaaaa 45  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  23635865 ttaacctccacaaaaaccaccattaatcctcaccaaaa 23635902  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 3763078 - 3763046
Alignment:
Q  8 ttaaccaccacaaaaaccaccattaatcctcac 40  Q
    ||||||||||||||||||| |||||||||||||    
T  3763078 ttaaccaccacaaaaaccatcattaatcctcac 3763046  T

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