View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2550_low_6 (Length: 300)
Name: NF2550_low_6
Description: NF2550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2550_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 79 - 300
Target Start/End: Complemental strand, 10969790 - 10969569
Alignment:
| Q |
79 |
caaacctccttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttctttgtttctttccctacaaatgctcttatcctttg |
178 |
Q |
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| T |
10969790 |
caaacctcgttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttctttgtttctttccctacaaatgctcttatcctttg |
10969691 |
T |
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| Q |
179 |
caatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaagaccccggtgacacattaagc |
278 |
Q |
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| T |
10969690 |
caatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaagaccccggtgacacattaagc |
10969591 |
T |
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| Q |
279 |
ttcacctcattaataataacat |
300 |
Q |
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| T |
10969590 |
ttcacctcattaataataacat |
10969569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 7754337 - 7754388
Alignment:
| Q |
79 |
caaacctccttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaa |
135 |
Q |
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| T |
7754337 |
caaacctccttgaagtgaagc-----cttaaatttggttgccaacgtttgacttcaa |
7754388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 7754395 - 7754447
Alignment:
| Q |
208 |
tattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaagac |
260 |
Q |
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| T |
7754395 |
tattagcaaaacaaaccctaaaccgaccaacctcgaagcaattaaaacaagac |
7754447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 29963499 - 29963635
Alignment:
| Q |
159 |
acaaatgctcttatcctttgcaatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaag |
258 |
Q |
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||||||||||| || || ||||||||| || || ||||||| ||| || |||||||||||||| ||| |||||||| ||||||||||||||||| | |
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| T |
29963499 |
acaaatgctctaattctcctcaatgcaatctcaactgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccg |
29963598 |
T |
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| Q |
259 |
accccggtgacacattaagcttcacctcattaataat |
295 |
Q |
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| T |
29963599 |
aacccggcgaaacattaagctttacttcattgataat |
29963635 |
T |
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