View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2550_low_7 (Length: 293)
Name: NF2550_low_7
Description: NF2550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2550_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 67 - 293
Target Start/End: Original strand, 12643269 - 12643495
Alignment:
| Q |
67 |
acagcaggttaggtcctacaatgtgaggggaaaacnnnnnnntatatatatagtttgagtgtgtaaggaacaaaagattttagttattgggaacttttga |
166 |
Q |
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| T |
12643269 |
acagcaggttaggtcctacaatgtgaggggaaaacaaaaaaaaaaaaaaatagtttgagtgtgtaaggaacaaaagattttagttattgggaacttttga |
12643368 |
T |
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| Q |
167 |
tgacaactcatctaaaagctcacaatatttggaatttatggaacatggttttcaacaaggagatgatgatactgctcgtagaaggaaccaattggcactg |
266 |
Q |
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| T |
12643369 |
tgacaactcatctaaaagctcacaatatttggaatttatggaacatggttttcaacaaggagttgatgatactactcgtagaagggaccaattggcactg |
12643468 |
T |
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| Q |
267 |
ccacaaattcatcaatgaatcattcaa |
293 |
Q |
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| T |
12643469 |
ccacaaattcatcaaggaatcattcaa |
12643495 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 24146366 - 24146482
Alignment:
| Q |
141 |
agattttagttattgggaacttttgatgacaactcatctaaaagctcacaatatttgga-atttatggaacatggttttcaacaaggagatgatgatact |
239 |
Q |
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| T |
24146366 |
agatttcagttattgggaatttatgatgacaacacatcttaaagctcacaacatatggagctttgttgagtttggtttacaacaaggagctgatgaactt |
24146465 |
T |
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| Q |
240 |
gctcgtagaaggaacca |
256 |
Q |
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| T |
24146466 |
gctcgtagaagggacca |
24146482 |
T |
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