View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2551_high_1 (Length: 664)

Name: NF2551_high_1
Description: NF2551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2551_high_1
NF2551_high_1
[»] chr1 (1 HSPs)
chr1 (1-657)||(36958378-36959034)


Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 36958378 - 36959034
Alignment:
Q  1 tcaggctgagcacaatgttgtggttattagtggatggaatgtttttggcttatggttttacatataggagggttctccagtaccattcctcaatttttta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36958378 tcaggctgagcacaatgttgtggtcattagtggatggaatgtttttggcttatggttttacatataggagggttctccggtaccattcctcaatttttta 36958477  T
Q  101 acaattagtggtcattacttaatacttgtccaggattgagatagtttcaagcttttggaactgtaggcaatctcaaccataaaaatcttttacttctata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36958478 acaattagtggtcattacttaatacttgtccaggattgagatagtttcaagcttttggaactgtaggcaatctcaaccataaaaatcttttacttctata 36958577  T
Q  201 agtgacgtgattgcattttaatccgttgtattgagaactgcacacatgtagtttctttctagaatgtagacgagctcattctcttcatccacgtgtcttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36958578 agtgacgtgattgcattttaatccgttgtattgagaactgcacacatgtagtttctttctagaatgtagacgagctcattctcttcatccatgtgtcttg 36958677  T
Q  301 tctacttgtaacataatgcaatgatttatgtttcaattgaatgcaataagtagcagaatgttccaatgccctcttgaacataaagggcgctgtagcatcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36958678 tctacttgtaacataatgcaatgatttatgtttcaattgaatgcaataagtagcagaatgttccaatgccctcttgaacataaagggcgctgtagcatcc 36958777  T
Q  401 tctgcctctctgtgcgcgcgcacccacacaggcatgcacacgacatgtcaagtgagaggtgcaggggtcaatactcattcagtcctatgtgaatgatcaa 500  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36958778 tctgcctctctgtgcgcgcgcacccacacaggcgtgcacacgacatgtcaagtgagaggtgcaggggtcaatactcattcagtcctatgtgaatgatcaa 36958877  T
Q  501 aattagaatttcatttctcatgctctcacccaatatcttcctatatatttgtatgcatgatgtagtaagcattcatgtaatgtaatgcttgtttcctcta 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36958878 aattagaatttcatttctcatactctcacccaatatcttcctatatatttgtatgcatgatgtagtaagcattcatgtaatgtaatgcttgtttcctcta 36958977  T
Q  601 tattcccttccctcttttggagcaatattttctatctgttcaactcttgttcatctc 657  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36958978 tattcccttccctcttttggagcaatattttctatctgttcaattcttgttcatctc 36959034  T

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