View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2551_high_2 (Length: 460)
Name: NF2551_high_2
Description: NF2551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2551_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 1342263 - 1342126
Alignment:
| Q |
19 |
aaatttactgctatacgaattatgattgtgttttgtagtgaattgagtgaggatgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatg |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1342263 |
aaatttactgctatatgaattatgattgtgttttgtagtgaattgagtgagggtgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatg |
1342164 |
T |
|
| Q |
119 |
ggattttatataagctggaggataatgcttatgtcaag |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1342163 |
ggattttatataagctggaggataatgcttatgtcaag |
1342126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 1342021 - 1341951
Alignment:
| Q |
261 |
catgttgaaaattatgtattatgttattttgtttgattttatgttgagaattttctgctttagggtttatt |
331 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| | |||||| | ||||||||||||| |
|
|
| T |
1342021 |
catgttgaaaattgtgtattatgttattttgtttgattttatgttcaaaattttgttttttagggtttatt |
1341951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 9394475 - 9394334
Alignment:
| Q |
279 |
ttatgttattttgtttgattttatgttgagaattttctgctttagggtttattcatatgatttcgtgttgaaaattgggttttagtgtttatttctttta |
378 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9394475 |
ttatgttattttgtttgattttatgttgaaaattttcttctttagggtttattcatatgatttcgtgttgaaaattgggttttagtgtttatttctttta |
9394376 |
T |
|
| Q |
379 |
ttgcatgttggaaattctgtttctattttaattatgttgaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9394375 |
ttgcatgttggaaattctgtttctattttatttatgttgaaa |
9394334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 9394702 - 9394585
Alignment:
| Q |
39 |
tatgattgtgttttgtagtgaattgagtgaggatgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggag |
138 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9394702 |
tatgattgtgttttgtagtgaatcgagtgaggatgaaagtttgaaggcaaagtttcactaccgtgaagccaaggttgatgggattttatataagctggag |
9394603 |
T |
|
| Q |
139 |
gataatgcttatgtcaag |
156 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9394602 |
gataatgcttatgtcaag |
9394585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 31944214 - 31944097
Alignment:
| Q |
39 |
tatgattgtgttttgtagtgaattgagtgaggatgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggag |
138 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
31944214 |
tatgattgtgttttgtagtgaatcgagtgatgatgaaagtttcaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggac |
31944115 |
T |
|
| Q |
139 |
gataatgcttatgtcaag |
156 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31944114 |
gataatgcttatgtcaag |
31944097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 31943935 - 31943907
Alignment:
| Q |
279 |
ttatgttattttgtttgattttatgttga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31943935 |
ttatgttattttgtttgattttatgttga |
31943907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 35535496 - 35535410
Alignment:
| Q |
70 |
gatgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgtcaag |
156 |
Q |
| |
|
|||||||||||||||||| ||||||| || | ||||||||| ||||||||| || ||||||| ||||| ||||||||||||||||| |
|
|
| T |
35535496 |
gatgaaagtttgaaggcgtagtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaag |
35535410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 5644378 - 5644306
Alignment:
| Q |
80 |
tgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgt |
152 |
Q |
| |
|
|||||||||||||||| || | ||||| ||| ||||||||| || ||||||||||| | |||||||||||||| |
|
|
| T |
5644378 |
tgaaggcgaagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgt |
5644306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University