View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2551_low_3 (Length: 420)
Name: NF2551_low_3
Description: NF2551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2551_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 5823096 - 5822841
Alignment:
| Q |
16 |
cacatagcatctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggccaaatggtcttttcat |
115 |
Q |
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| T |
5823096 |
cacatagcatctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggtcaaatggtcttttcat |
5822997 |
T |
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| Q |
116 |
gaattgttcacttttgtagatggctgtggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgcctta |
215 |
Q |
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| T |
5822996 |
gaattgtt-tct----------gctttgataactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgcctta |
5822908 |
T |
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| Q |
216 |
cccttgtccaaattaggcacgtacct-----atttcatccaaattaagaaatgttatttgataaaat |
277 |
Q |
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| T |
5822907 |
cccttgtccaaattaggcacatacctaattcaattcaaccaaattaagaaatgttagttgataaaat |
5822841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 5832970 - 5833182
Alignment:
| Q |
16 |
cacatagcatctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggccaaatggtcttttcat |
115 |
Q |
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| T |
5832970 |
cacaaagcatctgagtatacatgctttgaaatgaatcaggacaaaggatagcttcatctggacttgttaacacattgtaagggtcaaatggtcttttctt |
5833069 |
T |
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| Q |
116 |
gaattgttcacttttgtagatggctgtggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgcctta |
215 |
Q |
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| T |
5833070 |
aaactgttcacttttgtagtaggctgttagaactggacgtgccactaacccacttggagtttttgtttctgctttgatgaaaagaaagtgaagtgctttt |
5833169 |
T |
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| Q |
216 |
cccttgtccaaat |
228 |
Q |
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| T |
5833170 |
cctttgtccaaat |
5833182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 16256614 - 16256678
Alignment:
| Q |
342 |
aagtttggatggaggtgatgaattggatgcaattcaattttataactcctcctaatttgattatt |
406 |
Q |
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| T |
16256614 |
aagtttagagggaggtgatgaattggatacaattcaattttattactcctcctgatttgattatt |
16256678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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