View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2551_low_4 (Length: 395)
Name: NF2551_low_4
Description: NF2551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2551_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 38951016 - 38951387
Alignment:
| Q |
10 |
attattctattagtgtcaatggttgttagttgactcctttctcatgttaagtatatggtattaaattgtagcttttaatattatactagattttgttgca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38951016 |
attattctattagtgtcaatggttgttagttgactcctttctcatgttaagtatatggtattaaattgtagcttttaatattatactagattttgttgca |
38951115 |
T |
|
| Q |
110 |
taattggtgagagagatatttggtcttttgatttggatttacaatttcaaggcgttgaaaagtagtggattgaagtggtaaagtgggattttcatgtgga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38951116 |
taattggtgagagagatatttggtcttttgatttggatttacaatttcaaggcgttgaaaagtagtggattgaagtggtaaagtgggattttcatgtgga |
38951215 |
T |
|
| Q |
210 |
aggtttgtctctactctaagtctaagatatgctgagctgtgatgatgatcatgatgatggagatattgatctattctatgactcattggatagtttaaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38951216 |
aggtttgtctctactctaagtctaagatatgctgagctgtgatgatgatcatgatgatggagatattgatctattctatgactcattggatagtttaaca |
38951315 |
T |
|
| Q |
310 |
ggtgaagattctgttttagacgaagaagggtttggttctgaaaggagaggttgttttgtttatgatgaaatt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38951316 |
ggtgaagattctgttttagacgaagaagggtttggttctgaaaggagaggttgttttgtttatgatgaaatt |
38951387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University