View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2551_low_6 (Length: 314)
Name: NF2551_low_6
Description: NF2551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2551_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 33404607 - 33404898
Alignment:
| Q |
1 |
ggtgttcaagggttcgaaccccataccttgtcgttaccaactgagttcaattcatgggcaaaagcaaactttaaatttgtcaacnnnnnnnngaa-cgct |
99 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||| |
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| T |
33404607 |
ggtgttcgagggttcgaatcccataccttgtcgttaccaactgagttcaactcatgggcacaagcaaactttaaatttgtcaaaaaaaaaaaaaaacgct |
33404706 |
T |
|
| Q |
100 |
attatacctaccaaaattgagtgaatatttaaaataatattcatgttatttctatatttttagaatgatac-aaatctgtaagtataactgagcccaaaa |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33404707 |
attatacctagcaaaattgagtgaatatttaaaataatattcattttatttctatatttttagaatgatacaaaatctgtaagtataactgagcccaaaa |
33404806 |
T |
|
| Q |
199 |
gtgtatgaatatatatgataaaccttnnnnnnnnntcttctctaaagtaagagctcatacaagatagagtattatcacgtctttcttttgtc |
290 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33404807 |
gtgtatgaatatatatgataaaccttaaacaaaaatcttctctaaagtaagagctcatacaagatagagtattatcacgtctttcttttgtc |
33404898 |
T |
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