View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2551_low_8 (Length: 286)
Name: NF2551_low_8
Description: NF2551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2551_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 38209256 - 38209527
Alignment:
| Q |
8 |
aagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaagctattcatatgactatgaagaatgaaaaggcttcaacaag |
107 |
Q |
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| T |
38209256 |
aagctgagaagaatgaagatgatatacttagggatatggttgaagagaataagtctaaagctattcatatgattatgaagaatgaaaaggcttcaacaag |
38209355 |
T |
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| Q |
108 |
ctaatcaaaggtaagggataaaaacatttctacattcaatgtcgtcctaaattaacttatatgttatacatatgattttatcagcaccttttgtgc--at |
205 |
Q |
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| T |
38209356 |
ctaataaaaggtaaggga-aaaaacatttctacattgaatgttgttctaaattaacttatatgctattcaaatgattttatcagcaccctttgtgcatat |
38209454 |
T |
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| Q |
206 |
taatattgatatctataattttgttttatttgttacaggatcattcataaaacttgttgtagcaggaggaact |
278 |
Q |
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| T |
38209455 |
aaatattggtatccatcattctgttttatttgtcacagggtcattcataaagcttgtagtagcaggaggaact |
38209527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 32248988 - 32248864
Alignment:
| Q |
1 |
aaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaagctattcatatgactatgaagaatgaaaaggctt |
100 |
Q |
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||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
32248988 |
aaatggcaagcagagaagattgaagatgatatacttagggagatggttgaagaggataagtctaaagctattcacatgattatgaagaatgaaaaggctt |
32248889 |
T |
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| Q |
101 |
caacaagctaatcaaaggtaaggga |
125 |
Q |
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|||||| ||||||||| |||||||| |
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| T |
32248888 |
caacaatctaatcaaaagtaaggga |
32248864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32193348 - 32193414
Alignment:
| Q |
1 |
aaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaag |
67 |
Q |
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| T |
32193348 |
aaatggcaagctgagaagattgaagattatatacttagggagatagttgaagaggataagtctaaag |
32193414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8843528 - 8843432
Alignment:
| Q |
1 |
aaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaagctattcatatgactatgaagaatgaaaagg |
97 |
Q |
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||||||||||| || |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8843528 |
aaatggcaagcagaaaagattgaagatgaaatacttagggagatggttgaagaggataagtctaaagctattcatatgattatgaagaatgaaaagg |
8843432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36376476 - 36376596
Alignment:
| Q |
1 |
aaatggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaagctattcatatgactatgaagaatgaaaaggctt |
100 |
Q |
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||||||||||||||||| ||| ||||| | ||||| || ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||| ||| |
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| T |
36376476 |
aaatggcaagctgagaaaattgaagatgacatactcagagagatggttgaagaggacaagtccaaacttattcatatgatcatgaagaatgaaaagactt |
36376575 |
T |
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| Q |
101 |
caacaagctaatcaaaggtaa |
121 |
Q |
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||||||||||||||||||||| |
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| T |
36376576 |
caacaagctaatcaaaggtaa |
36376596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 35958483 - 35958381
Alignment:
| Q |
4 |
tggcaagctgagaagatttaagataatatacttagggagatggttgaagaggataagtctaaagctattcatatgactatgaagaatgaaaaggcttcaa |
103 |
Q |
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|||||||||||||||||| ||||| |||| || ||||| ||||| || ||||||||||||||| | | ||||||| |||||||||||||||||||||| |
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| T |
35958483 |
tggcaagctgagaagattgaagatgatattctaagggaaatggtcgaggaggataagtctaaatcattccatatgatcatgaagaatgaaaaggcttcaa |
35958384 |
T |
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| Q |
104 |
caa |
106 |
Q |
| |
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||| |
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|
| T |
35958383 |
caa |
35958381 |
T |
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