View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_high_1 (Length: 1353)

Name: NF2552_high_1
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_high_1
NF2552_high_1
[»] chr7 (42 HSPs)
chr7 (170-1207)||(22889894-22890931)
chr7 (1-136)||(22889725-22889860)
chr7 (1-135)||(22876349-22876483)
chr7 (9-135)||(22894385-22894511)
chr7 (1-114)||(22805742-22805856)
chr7 (11-123)||(22873589-22873701)
chr7 (1-114)||(22831464-22831578)
chr7 (942-1055)||(16781367-16781480)
chr7 (1-91)||(22815460-22815550)
chr7 (1284-1346)||(22891008-22891070)
chr7 (1-114)||(22810077-22810191)
chr7 (11-106)||(22840501-22840596)
chr7 (1-111)||(22898696-22898809)
chr7 (10-104)||(22842612-22842706)
chr7 (172-286)||(22841241-22841350)
chr7 (924-1003)||(6532278-6532356)
chr7 (924-1055)||(36377996-36378127)
chr7 (172-286)||(22894561-22894670)
chr7 (994-1049)||(149852-149907)
chr7 (994-1049)||(12082695-12082750)
chr7 (994-1049)||(12309978-12310033)
chr7 (876-1027)||(18604638-18604788)
chr7 (1-104)||(22858852-22858955)
chr7 (11-73)||(22881013-22881075)
chr7 (994-1049)||(2356060-2356115)
chr7 (1010-1049)||(17839110-17839149)
chr7 (1010-1049)||(21650310-21650349)
chr7 (994-1049)||(26926280-26926335)
chr7 (1010-1049)||(34140652-34140691)
chr7 (949-1036)||(35479848-35479935)
chr7 (1010-1049)||(36394205-36394244)
chr7 (1010-1049)||(40588336-40588375)
chr7 (1010-1049)||(42682743-42682782)
chr7 (994-1049)||(48221123-48221178)
chr7 (1015-1049)||(3381061-3381095)
chr7 (994-1048)||(7414390-7414444)
chr7 (1010-1076)||(28979377-28979443)
chr7 (1015-1049)||(45363624-45363658)
chr7 (48-105)||(22840988-22841045)
chr7 (1010-1055)||(41048577-41048622)
chr7 (1010-1055)||(46862569-46862614)
chr7 (1010-1047)||(48270435-48270472)
[»] chr2 (20 HSPs)
chr2 (703-1089)||(17954819-17955204)
chr2 (886-1055)||(38417485-38417654)
chr2 (845-1095)||(533940-534193)
chr2 (924-1047)||(25897830-25897953)
chr2 (847-990)||(12137614-12137757)
chr2 (1010-1049)||(3941526-3941565)
chr2 (924-1043)||(34371441-34371558)
chr2 (1015-1049)||(31992321-31992355)
chr2 (1009-1049)||(19472012-19472052)
chr2 (1015-1055)||(40678987-40679027)
chr2 (1010-1049)||(10365015-10365054)
chr2 (994-1049)||(16253249-16253304)
chr2 (994-1049)||(16706740-16706795)
chr2 (994-1049)||(18878281-18878336)
chr2 (1010-1049)||(26617861-26617900)
chr2 (1010-1049)||(26858963-26859002)
chr2 (994-1049)||(29110932-29110987)
chr2 (1010-1049)||(35491424-35491463)
chr2 (995-1049)||(37058633-37058687)
chr2 (1010-1055)||(16581287-16581332)
[»] chr5 (18 HSPs)
chr5 (705-1049)||(13706918-13707257)
chr5 (942-1095)||(34144277-34144432)
chr5 (947-1042)||(13933455-13933550)
chr5 (994-1049)||(34595095-34595150)
chr5 (994-1049)||(15798472-15798527)
chr5 (994-1049)||(16418476-16418531)
chr5 (994-1049)||(28717846-28717901)
chr5 (1010-1055)||(1400680-1400725)
chr5 (1010-1049)||(3601125-3601164)
chr5 (994-1049)||(7082060-7082115)
chr5 (1010-1049)||(8537734-8537773)
chr5 (994-1049)||(12742484-12742539)
chr5 (994-1049)||(12805302-12805357)
chr5 (943-1046)||(13816714-13816817)
chr5 (994-1049)||(33370422-33370477)
chr5 (1010-1049)||(35565056-35565095)
chr5 (1010-1049)||(35927820-35927859)
chr5 (1015-1049)||(2599008-2599042)
[»] chr8 (15 HSPs)
chr8 (845-1054)||(7082317-7082526)
chr8 (945-1035)||(26172227-26172317)
chr8 (994-1049)||(12505101-12505156)
chr8 (994-1045)||(3589638-3589689)
chr8 (994-1049)||(8751546-8751601)
chr8 (1010-1049)||(16575487-16575526)
chr8 (1010-1049)||(18440675-18440714)
chr8 (994-1049)||(22843720-22843775)
chr8 (1010-1049)||(24861138-24861177)
chr8 (1010-1049)||(26452120-26452159)
chr8 (1010-1049)||(37780438-37780477)
chr8 (1010-1049)||(40702155-40702194)
chr8 (1010-1049)||(41275189-41275228)
chr8 (1010-1049)||(41857354-41857393)
chr8 (1010-1049)||(42603249-42603288)
[»] chr4 (33 HSPs)
chr4 (703-859)||(2484435-2484591)
chr4 (945-1049)||(8351840-8351944)
chr4 (830-930)||(34867983-34868085)
chr4 (942-1041)||(893502-893601)
chr4 (893-1055)||(37614516-37614677)
chr4 (994-1049)||(23124915-23124970)
chr4 (994-1049)||(44100114-44100169)
chr4 (1294-1342)||(18049941-18049989)
chr4 (994-1049)||(3510812-3510867)
chr4 (994-1049)||(20759520-20759575)
chr4 (994-1049)||(20765911-20765966)
chr4 (994-1049)||(32938285-32938340)
chr4 (737-813)||(34919060-34919138)
chr4 (994-1048)||(24074875-24074929)
chr4 (1010-1055)||(29699691-29699736)
chr4 (1010-1055)||(49424136-49424181)
chr4 (1001-1049)||(1225936-1225984)
chr4 (1010-1049)||(957838-957877)
chr4 (1010-1049)||(1042536-1042575)
chr4 (1010-1049)||(6282706-6282745)
chr4 (1010-1049)||(9489464-9489503)
chr4 (994-1049)||(12587416-12587471)
chr4 (994-1049)||(14331077-14331132)
chr4 (994-1049)||(17211035-17211090)
chr4 (994-1049)||(20779252-20779307)
chr4 (994-1049)||(21711329-21711384)
chr4 (1010-1049)||(24606537-24606576)
chr4 (1010-1049)||(28082023-28082062)
chr4 (1010-1049)||(34153671-34153710)
chr4 (1010-1049)||(44560563-44560602)
chr4 (1015-1049)||(12227871-12227905)
chr4 (1015-1049)||(39588719-39588753)
chr4 (1016-1049)||(42420833-42420866)
[»] chr1 (27 HSPs)
chr1 (924-1002)||(31245573-31245651)
chr1 (1-104)||(21150178-21150281)
chr1 (958-1047)||(30973752-30973841)
chr1 (994-1049)||(21760750-21760805)
chr1 (994-1049)||(26793077-26793132)
chr1 (994-1049)||(39900287-39900342)
chr1 (1010-1055)||(36909346-36909391)
chr1 (994-1046)||(21485019-21485071)
chr1 (1294-1342)||(32502890-32502938)
chr1 (1010-1049)||(4209036-4209075)
chr1 (994-1049)||(5764975-5765030)
chr1 (1010-1049)||(13972710-13972749)
chr1 (994-1049)||(16077577-16077632)
chr1 (994-1049)||(16532423-16532478)
chr1 (1010-1049)||(19262759-19262798)
chr1 (1010-1049)||(24364150-24364189)
chr1 (1010-1049)||(27259714-27259753)
chr1 (994-1049)||(34335972-34336027)
chr1 (994-1049)||(39224579-39224634)
chr1 (1010-1049)||(44337701-44337740)
chr1 (1010-1049)||(44597486-44597525)
chr1 (994-1049)||(48707298-48707353)
chr1 (1010-1049)||(49396489-49396528)
chr1 (1010-1049)||(49427173-49427212)
chr1 (924-1088)||(16243070-16243232)
chr1 (897-975)||(37588314-37588392)
chr1 (1015-1056)||(14174133-14174174)
[»] chr6 (12 HSPs)
chr6 (924-1055)||(11091270-11091401)
chr6 (994-1045)||(5973408-5973459)
chr6 (994-1049)||(20242516-20242571)
chr6 (994-1049)||(22136500-22136555)
chr6 (998-1049)||(33718835-33718886)
chr6 (994-1049)||(34132355-34132410)
chr6 (994-1048)||(3097888-3097942)
chr6 (1010-1055)||(3766096-3766141)
chr6 (1010-1055)||(34803271-34803316)
chr6 (993-1049)||(18744343-18744399)
chr6 (1010-1049)||(13402322-13402361)
chr6 (994-1049)||(17465657-17465712)
[»] chr3 (21 HSPs)
chr3 (1294-1342)||(4395337-4395385)
chr3 (994-1049)||(25156239-25156294)
chr3 (994-1049)||(33449523-33449578)
chr3 (994-1055)||(4095565-4095626)
chr3 (1005-1049)||(7953997-7954041)
chr3 (1010-1049)||(4004468-4004507)
chr3 (1010-1049)||(6464726-6464765)
chr3 (1010-1049)||(24702652-24702691)
chr3 (994-1049)||(29635303-29635358)
chr3 (994-1049)||(37281235-37281290)
chr3 (1010-1049)||(41577727-41577766)
chr3 (1010-1049)||(49219117-49219156)
chr3 (1010-1049)||(49610288-49610327)
chr3 (1010-1049)||(52569789-52569828)
chr3 (1015-1049)||(774719-774753)
chr3 (1015-1049)||(2268874-2268908)
chr3 (1015-1049)||(17370605-17370639)
chr3 (902-1047)||(33426934-33427082)
chr3 (1010-1055)||(13896245-13896290)
chr3 (1016-1049)||(15636829-15636862)
chr3 (1010-1055)||(45100841-45100886)
[»] scaffold0181 (1 HSPs)
scaffold0181 (994-1049)||(24676-24731)
[»] scaffold0294 (1 HSPs)
scaffold0294 (994-1049)||(777-832)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1010-1049)||(18275-18314)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1010-1049)||(1577-1616)
[»] scaffold0004 (1 HSPs)
scaffold0004 (995-1049)||(39647-39701)


Alignment Details
Target: chr7 (Bit Score: 1002; Significance: 0; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 1002; E-Value: 0
Query Start/End: Original strand, 170 - 1207
Target Start/End: Original strand, 22889894 - 22890931
Alignment:
Q  170 ctattgctagtctcatttgggacctactagtaaatgtccctttacctaacttagctacgtattatcaccaaaagaaacatcaaatcaaatggttactaaa 269  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22889894 ctattgctagtctcatttgggacctactaataagtgtccctttacctaacttagctacgtattatcaccaaaagaaacatcaaatcaaatggttactaaa 22889993  T
Q  270 attgcgtatctcatttgagtcaatttaagtggtggaaggatggataaagataatgttggttttgactaaaatgactggggcagtttttaaaggagataat 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22889994 attgcgtatctcatttgagtcaatttaagtggtggaaggatggataaagataatgttggttttgactaaaatgactggggcagtttttaaaggagataat 22890093  T
Q  370 ttttaggaaacttggaagttaagagttgagttggaaagattctttcttcctctaacataggtcattttgggccgaattaggtaaacaatttgaaaatcgc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890094 ttttaggaaacttggaagttaagagttgagttggaaagattctttcttcctctaacataggtcattttgggccgaattaggtaaacaatttgaaaatcgc 22890193  T
Q  470 tctttaagcttaaaaaattgttctcttgcaccttaaaatttcattaatacccccaacagcaatgaattatcgtcgctacccagcagcagttaattgtcgt 569  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890194 tctttaagcttgaaaaattgttctcttgcaccttaaaatttcattaatacccccaacagcaatgaattatcgtcgctacccagcagcagttaattgtcgt 22890293  T
Q  570 tcggtctttttgcaaccacaattgtgttcaactgcagttgcgttcgagacttattctagaacagtaacaacacgtgttctggatttattttataaaagca 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890294 tcggtctttttgcaaccacaattgtgttcaactgcagttgcgttcgagacttattctagaacagtaacaacacgtgttctggatttattttataaaagca 22890393  T
Q  670 aaaatagttatcacttttgtttgaaacacaaaactccaatctcactcaaatgaatctcatccaatttctttcatcaaaatcaaaagttatcaactattct 769  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890394 aaaatagttatcacttttgtttgaaacacaaaactccaatctcactcaaatgaatctcatccaatttctttcatcaaaatcaaaagttatcaactattct 22890493  T
Q  770 acaagtaagtgttaataatctcttctattcacattgttagttttatataannnnnnnnccttcaaaatttggtggaaatgttagtgtttatgattggata 869  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  22890494 acaagtaagtgttaataatctcttctattcacattgttagttttatataattttttttccttcaaaatttggtggaaatgttagtgtttatgattggata 22890593  T
Q  870 aattattgatattttgggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagt 969  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890594 aattattgatattttgggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagt 22890693  T
Q  970 tgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgatatttttattgtcttttgttg 1069  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890694 tgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgatatttttattgtcttttgttg 22890793  T
Q  1070 tgtagatatgactgagaacctacatatgcgtaaagagaccatgacaagcagttcccgcaaggagagagtgacagtgaaccctactaaaatctgcatttcc 1169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22890794 tgtagatatgactgagaacctacatatgcgtaaagagaccatgacaagcagttcccgcaaggagagagtgacagtgaaccctactaaaatctgcatttcc 22890893  T
Q  1170 aacgatgtacgtcacaaactgccaatgcatttaaccaa 1207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22890894 aacgatgtacgtcacaaactgccaatgcatttaaccaa 22890931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22889725 - 22889860
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    ||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22889725 ttggaatccattatatatgaaactgttgtcttcacttgcaaccaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattataggttgt 22889824  T
Q  101 gaataataatgcttatacagttcggttcattgtttc 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  22889825 gaataataatgcttatacagttcggttcattgtttc 22889860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 22876349 - 22876483
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    ||||||||||||||| ||||||||| | |||||||||||||| ||||||||| || ||||||||||||||||| | |||| |||||||||| ||| ||||    
T  22876349 ttggaatccattatagatgaaactgttttcttcacttgctaccaatgtaacaagataaaacaacatgaacacaagcctgaagaacatgattatagtttgt 22876448  T
Q  101 gaataataatgcttatacagttcggttcattgttt 135  Q
    | |||||||||||||| |||||| ||| |||||||    
T  22876449 ggataataatgcttatgcagttctgttgattgttt 22876483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 22894385 - 22894511
Alignment:
Q  9 cattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgtgaataata 108  Q
    ||||||| ||||||||  |||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||||||||||||| ||| ||||||||||||    
T  22894385 cattatagatgaaacttttgtcttcacttggtaccaatgtaacaagaaaaaacaacataaacacaagcctgaggaacatgattatagtttgtgaataata 22894484  T
Q  109 atgcttatacagttcggttcattgttt 135  Q
    ||||||||||||||| ||||| |||||    
T  22894485 atgcttatacagttctgttcagtgttt 22894511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 22805742 - 22805856
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||| |||     
T  22805742 ttggaatccattatagatgaaactgttatcttcacttgctactaatgtaacatgaaaaaacaacataaacacaagtttgaggaacatgattatagtttga 22805841  T
Q  101 gaat-aataatgctt 114  Q
    |||| ||||||||||    
T  22805842 gaatgaataatgctt 22805856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 22873589 - 22873701
Alignment:
Q  11 ttataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgtgaataataat 110  Q
    ||||| ||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| | ||||||||||||||| | | ||||||||||||||    
T  22873589 ttatagatgaaactgttgtcttcacttgctactaatgtaacaagataaaacaacatgagcacaagcctgaggaacatgattatggattgtgaataataat 22873688  T
Q  111 gcttatacagttc 123  Q
    |||||| ||||||    
T  22873689 gcttatgcagttc 22873701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 22831464 - 22831578
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |  |||||||||||||| ||| ||||    
T  22831464 ttggaaaccattatagatgaaactgctgtcttcacttgctacaaatgtaacaagaaaaaacaacataaacacaagcttgaggaacatgattatagtttgt 22831563  T
Q  101 gaat-aataatgctt 114  Q
    |||| ||||||||||    
T  22831564 gaatgaataatgctt 22831578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 942 - 1055
Target Start/End: Original strand, 16781367 - 16781480
Alignment:
Q  942 tttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttt 1041  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| |  || ||||||||| |||  ||| ||||||||||||||||||||||||||     
T  16781367 tttaagttcaatgtgatagtttaaaagttgaaataacacaatgaatagagattatatattttgcactcaaagtgtttgatgaaatgcttgaatgagttta 16781466  T
Q  1042 tcattgatattttt 1055  Q
    |||||||| |||||    
T  16781467 tcattgattttttt 16781480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22815460 - 22815550
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgatt 91  Q
    ||||||||||||||| ||||||||| ||||| |||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  22815460 ttggaatccattatatatgaaactgttgtctacacttgctaccaatgtaacgagaaaaaacaacatgaacacatgtttgaggaacatgatt 22815550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1284 - 1346
Target Start/End: Original strand, 22891008 - 22891070
Alignment:
Q  1284 cagatatagattgtttctttctacatctgctgcacaattcacaaatcatgattttgatgatgt 1346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22891008 cagatatagattgtttctttctacatctgctgcacaattcacaaatcatgattttgatgatgt 22891070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 22810077 - 22810191
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    |||||| |||||||| ||||||||| | |||| ||||||||||||||||||| ||||||||||||| |||||| |  |||||||||||||| ||| ||||    
T  22810077 ttggaaaccattatagatgaaactgttatctttacttgctactaatgtaacaagaaaaaacaacataaacacaagcttgaggaacatgattatagtttgt 22810176  T
Q  101 gaat-aataatgctt 114  Q
    |||| ||||||||||    
T  22810177 gaatgaataatgctt 22810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 22840501 - 22840596
Alignment:
Q  11 ttataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgtgaataa 106  Q
    ||||| ||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||| ||| ||||||||||    
T  22840501 ttatagatgaaactgttgtctatacttgctaccaatgtaacatgaaaaaacaacatgaacacaagtttgatgaacatgattatagtttgtgaataa 22840596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 22898696 - 22898809
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgatt---ctaggt 97  Q
    |||||| |||||||| ||||||||| | |||| ||||||||| ||||||||||||||||||||||||||| || |  ||||||||||||||    ||| |    
T  22898696 ttggaaaccattatagatgaaactgttatctttacttgctaccaatgtaacatgaaaaaacaacatgaacgcaagcttgaggaacatgattatagtagtt 22898795  T
Q  98 tgtgaataataatg 111  Q
    ||||||||||||||    
T  22898796 tgtgaataataatg 22898809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 22842612 - 22842706
Alignment:
Q  10 attataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgtgaat 104  Q
    |||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||| |  |||||||||||||| | | ||||||||    
T  22842612 attatagatgaaactgttgtcttcacttgctaccaatgtaacaagaaaaaacaacataaacacaagcttgaggaacatgattattgtttgtgaat 22842706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 22841241 - 22841350
Alignment:
Q  172 attgctagtctcatttgggacctactagtaaatgtccctttacctaacttagctacgtattatcaccaaaagaaacatcaaatcaaatggttactaaaat 271  Q
    ||||| ||||| ||||||| |||||||  ||||||||    |||||||||||||| | ||||||||||||||||||     |||||||||||||||| ||    
T  22841241 attgcaagtcttatttgggtcctactaagaaatgtcctggaacctaacttagctatgaattatcaccaaaagaaac-----atcaaatggttactaatat 22841335  T
Q  272 tgcgtatctcatttg 286  Q
    |||||||||||||||    
T  22841336 tgcgtatctcatttg 22841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 924 - 1003
Target Start/End: Complemental strand, 6532356 - 6532278
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatatttt 1003  Q
    ||||||||||| ||||  |||||||||||||| ||||| ||||||||| ||||||||||||||| |||||| ||||||||    
T  6532356 aatgttgtttatactaggtttaagttcaatgtggtagtataaaagttg-aataacacaatgaatcaatgttttatatttt 6532278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 924 - 1055
Target Start/End: Complemental strand, 36378127 - 36377996
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatga 1023  Q
    ||||||||||| ||||   ||||||||||| |  |||||||||| |||||||| |||||||||| ||  ||||| |||||  | | |||| ||||||||     
T  36378127 aatgttgtttagactaggattaagttcaatataatagtttaaaacttgaaataccacaatgaattaaaattgtacattttacaatgcaagtgtttgatgc 36378028  T
Q  1024 aatgcttgaatgagtttttcattgatattttt 1055  Q
    |||||| |||||| |||||||||||| |||||    
T  36378027 aatgctcgaatgaatttttcattgattttttt 36377996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 22894561 - 22894670
Alignment:
Q  172 attgctagtctcatttgggacctactagtaaatgtccctttacctaacttagctacgtattatcaccaaaagaaacatcaaatcaaatggttactaaaat 271  Q
    ||||| ||||| ||||||| |||||||  |||||||     |||||||||||||| | ||||||||||||||||||     |||||||||||||||||||    
T  22894561 attgcaagtctaatttgggtcctactaagaaatgtcttggaacctaacttagctatgaattatcaccaaaagaaac-----atcaaatggttactaaaat 22894655  T
Q  272 tgcgtatctcatttg 286  Q
     ||||||||||||||    
T  22894656 cgcgtatctcatttg 22894670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 149852 - 149907
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||||| || ||| |||| ||||||||||||| |||||||||||||||||||||    
T  149852 tgtatattatgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 149907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 12082695 - 12082750
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  12082695 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 12082750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 12310033 - 12309978
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  12310033 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 12309978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 876 - 1027
Target Start/End: Complemental strand, 18604788 - 18604638
Alignment:
Q  876 tgatattttgggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaat 975  Q
    |||||||||||||||| | |||||  ||   || |||| |||||||| ||||||||||||||||| |||||||  ||||| ||||||| | | |||||||    
T  18604788 tgatattttgggtagtttttgatcaaatgcttgtatgtgttgactatgaatgttgtttaaactaagtttaagtgtaatgtggtagtttgagaattgaaat 18604689  T
Q  976 aacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatg 1027  Q
     |||| ||||| |||   |||||||||||| ||  ||  |||||||||||||    
T  18604688 -acacgatgaacaaagtatgtatattttgtgctctaactgtttgatgaaatg 18604638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 22858852 - 22858955
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    ||||||||| ||||| ||||||| | |||||||||||||||| ||||||||| | ||| | ||||| || |||    |||||||||||||| ||| ||||    
T  22858852 ttggaatcctttatagatgaaaccgttgtcttcacttgctaccaatgtaacaagcaaacataacataaagacaaacttgaggaacatgattttagtttgt 22858951  T
Q  101 gaat 104  Q
    ||||    
T  22858952 gaat 22858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 22881013 - 22881075
Alignment:
Q  11 ttataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacaca 73  Q
    ||||| ||||||||| | |||||||||||||  ||||||||| ||||||||||||| ||||||    
T  22881013 ttatagatgaaactgttttcttcacttgctatcaatgtaacaagaaaaaacaacataaacaca 22881075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 2356060 - 2356115
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| ||||  |||||||||||| |||||||||||||||||||||    
T  2356060 tgtataatttgcactccaagtatttgatgaaatgtttgaatgagtttttcattgat 2356115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 17839110 - 17839149
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  17839110 caagtgtttgatgaaatgtttgaatgagtttttcattgat 17839149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 21650310 - 21650349
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  21650310 caagtgtttgatgaaatgtttgaatgagtttttcattgat 21650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 26926280 - 26926335
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||  |||||||||||||||||||||    
T  26926280 tgtataatttgcactccaagtgtttgatgaaatatttgaatgagtttttcattgat 26926335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 34140652 - 34140691
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  34140652 caagtgtttgatgaaatgtttgaatgagtttttcattgat 34140691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 949 - 1036
Target Start/End: Complemental strand, 35479935 - 35479848
Alignment:
Q  949 tcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatga 1036  Q
    ||||||| |||||||| || ||||||||||| ||||||| |||||| |||||| |  ||| | || |||||||||| ||| |||||||    
T  35479935 tcaatgtggtagtttagaaattgaaataacataatgaatcaatgttttatattcttcacttcgagtgtttgatgaactgcgtgaatga 35479848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 36394244 - 36394205
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  36394244 caagtgtttgatgaaatgtttgaatgagtttttcattgat 36394205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 40588336 - 40588375
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  40588336 caagtgtttgatgaaatgtttgaatgagtttttcattgat 40588375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 42682743 - 42682782
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  42682743 caagtgtttgatgaaatgtttgaatgagtttttcattgat 42682782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 48221178 - 48221123
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||||||| |||| ||||||| ||||| | |||||||||||||||||||    
T  48221178 tgtataatttgtactccaagtgtttgataaaatgttggaatgagtttttcattgat 48221123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Complemental strand, 3381095 - 3381061
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  3381095 gtttgatgaaatgtttgaatgagtttttcattgat 3381061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 994 - 1048
Target Start/End: Complemental strand, 7414444 - 7414390
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattga 1048  Q
    |||||| ||| ||||  ||| ||||||||||||| ||||||||||||||||||||    
T  7414444 tgtataatttttactcgaagtgtttgatgaaatgtttgaatgagtttttcattga 7414390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1010 - 1076
Target Start/End: Complemental strand, 28979443 - 28979377
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatatttttattgtcttttgttgtgtagat 1076  Q
    |||| ||||||||||||| ||||||||||||||||| ||| ||||| || | | || ||||||||||    
T  28979443 caagtgtttgatgaaatgtttgaatgagtttttcatcgattttttttttatttcttattgtgtagat 28979377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Complemental strand, 45363658 - 45363624
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  45363658 gtttgatgaaatgtttgaatgagtttttcattgat 45363624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 22840988 - 22841045
Alignment:
Q  48 taacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgtgaata 105  Q
    ||||| || ||||||||||||||||| |||  |||||||||||| | |||||||||||    
T  22840988 taacaagataaaacaacatgaacacaagtccaaggaacatgattattggttgtgaata 22841045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Original strand, 41048577 - 41048622
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||| ||||| |||||    
T  41048577 caagtgtttgatgaaatgtttgaatgagtttttcgttgattttttt 41048622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 46862614 - 46862569
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| |||||||||| |||||||||| |||||    
T  46862614 caagtgtttgatgaaatgtttgaatgagtatttcattgattttttt 46862569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1047
Target Start/End: Original strand, 48270435 - 48270472
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattg 1047  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  48270435 caagtgtttgatgaaatgtttgaatgagtttttcattg 48270472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 2e-77; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 703 - 1089
Target Start/End: Original strand, 17954819 - 17955204
Alignment:
Q  703 ctccaatctcactcaaatgaatctcatccaatttctttcatcaaaatcaa--aagttatcaactattctacaagtaagtgttaataatctcttctattca 800  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||| ||||||||||||  | ||||||||| ||| ||||||    
T  17954819 ctccaatctcactcaaatgaatctcatccaatttatttcatcaaaatcaagcaaattatcaacaattctacaagtagttattaataatcccttgtattca 17954918  T
Q  801 cattgttagtttt-at-ataannnnnnnnccttcaaaatttggtggaaatgttagtgtttatgattggataaattattgatattttgggtagtctgtgat 898  Q
    | ||||||||||| || ||            || ||||||||||||||||||||||||||| | |||||||| ||||||| |||| ||||||  ||||||    
T  17954919 cgttgttagtttttatgattttttttttctttttaaaatttggtggaaatgttagtgtttagggttggataatttattgaaatttagggtaggttgtgat 17955018  T
Q  899 cctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtat 998  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||| ||||||||||| | |||||||||||||     ||||||||||    
T  17955019 cctatatatgcatgttttgaccataaatgttgtttagactatattcaagttcaatgtggtagtttaaaattagaaataacacaat-----aatgttgtat 17955113  T
Q  999 attttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgatatttttattgtcttttgttgtgtagatatgactgagaacc 1089  Q
     ||||  | || ||| || |||| ||||| |||||||||||||||||| || |||| ||||| ||||||||||||||||||  ||||||||    
T  17955114 gttttacattaaaagtgtctgataaaatgtttgaatgagtttttcattaattttttcattgttttttgttgtgtagatatgtatgagaacc 17955204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 886 - 1055
Target Start/End: Complemental strand, 38417654 - 38417485
Alignment:
Q  886 ggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatga 985  Q
    |||||| || ||||| |||| ||||||||||||||  |||||||||||| | ||  |||||||| ||| | |||||||||||||||||||| ||||||||    
T  38417654 ggtagtttgggatccaatatttgcatgttttgacttaaaatgttgtttagattaggtttaagtttaatatggtagtttaaaagttgaaatagcacaatga 38417555  T
Q  986 ataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    || ||  |||||||||||  ||| |||| |||||||||||||||||||||| ||||| |||||| |||||    
T  38417554 atcaagattgtatattttacacttcaagtgtttgatgaaatgcttgaatgaattttttattgattttttt 38417485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 845 - 1095
Target Start/End: Original strand, 533940 - 534193
Alignment:
Q  845 aaatgttagtgtttatgattggataaattattgatattttgggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaattt 944  Q
    ||||||| ||||| ||| ||||  |||||||||   ||||||||||| |||||||  |||| || ||||||  | | ||| ||||||||| |  ||||||    
T  533940 aaatgttggtgttcatggttgggaaaattattggatttttgggtagtttgtgatcaaatat-tgaatgtttgcattgtaattgttgtttagaaaaaattt 534038  T
Q  945 aagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttca 1044  Q
    | || |||||| || |||||||| ||||||||| ||||| ||| ||   ||||||||||| ||| |||| |||||||||||||  ||||| |||| ||||    
T  534039 aggtacaatgtggtggtttaaaaattgaaataatacaatcaattaagaatgtatattttgcactccaagtgtttgatgaaatgtctgaataagttgttca 534138  T
Q  1045 ttga-tatttttatt---gtcttttgttgtgtagatatgactgagaacctacata 1095  Q
    |||| ||||||| ||   ||  |||||||||||||||||||||  ||||||||||    
T  534139 ttgattatttttttttaagttgtttgttgtgtagatatgactggcaacctacata 534193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 924 - 1047
Target Start/End: Complemental strand, 25897953 - 25897830
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatga 1023  Q
    |||||||||||  |||  ||| | |||||||  |||||||||||||||||||| |||||| ||| |||||| ||||||||  ||| |||| | ||||||     
T  25897953 aatgttgtttaggctaggtttgacttcaatgaggtagtttaaaagttgaaatagcacaatcaatcaatgttttatatttttcactccaagtgattgatgg 25897854  T
Q  1024 aatgcttgaatgagtttttcattg 1047  Q
    ||||  ||||| ||||||||||||    
T  25897853 aatgtatgaataagtttttcattg 25897830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 847 - 990
Target Start/End: Original strand, 12137614 - 12137757
Alignment:
Q  847 atgttagtgtttatgattggataaa-ttattgatattttgggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaattta 945  Q
    |||||||||||| ||||| |||||| |||||||| |||||  |||| | |||||  |||| || ||||||| ||| | ||||||||||||| ||| ||||    
T  12137614 atgttagtgtttgtgatt-gataaatttattgattttttgattagtttatgatcaaatatttgtatgttttaactgtgaatgttgtttaaattaagttta 12137712  T
Q  946 agttcaatgttgtagtttaaaagttgaaataacacaatgaataaa 990  Q
    |||  | ||| ||||||||||| |||||  |||||||| ||||||    
T  12137713 agtgtattgtggtagtttaaaaattgaagcaacacaataaataaa 12137757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 3941526 - 3941565
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  3941526 caagcgtttgatgaaatgtttgaatgagtttttcattgat 3941565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 924 - 1043
Target Start/End: Complemental strand, 34371558 - 34371441
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatga 1023  Q
    ||||||||||| |||| |||||||| ||||   ||| |||| || ||||||||||| | ||| | |||||||||||||| ||||  |||| |||||||||    
T  34371558 aatgttgtttagactagatttaagtccaatag-gtaatttagaacttgaaataacatagtgagtcaatgttgtatattt-gtacaccaagtgtttgatga 34371461  T
Q  1024 aatgcttgaatgagtttttc 1043  Q
    || || ||||||||||||||    
T  34371460 aacgcatgaatgagtttttc 34371441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Complemental strand, 31992355 - 31992321
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||||||||||||||||||||||||||||||||    
T  31992355 gtttgatgaaatgcttgaatgagtttttcattgat 31992321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1009 - 1049
Target Start/End: Complemental strand, 19472052 - 19472012
Alignment:
Q  1009 acaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  19472052 acaagtgtttgatgaaatgtttgaatgagtttttcattgat 19472012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1015 - 1055
Target Start/End: Complemental strand, 40679027 - 40678987
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  40679027 gtttgatgaaatgtttgaatgagtttttcattgattttttt 40678987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 10365054 - 10365015
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  10365054 caagtgtttgatgaaatgtttgaatgagtttttcattgat 10365015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 16253249 - 16253304
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||| ||||| |||||||||||||||||||||    
T  16253249 tgtataatttgcactccaagtgtttgataaaatgtttgaatgagtttttcattgat 16253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 16706740 - 16706795
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| |||  ||| ||||||||||||| |||||||||||||||||||||    
T  16706740 tgtataatttgcactctaagtgtttgatgaaatgtttgaatgagtttttcattgat 16706795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 18878281 - 18878336
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||| ||||||||| |||||||||||||||||||||    
T  18878281 tgtataatttgcactccaagtgttcgatgaaatgtttgaatgagtttttcattgat 18878336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 26617900 - 26617861
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  26617900 caagtgtttgatgaaatgtttgaatgagtttttcattgat 26617861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 26858963 - 26859002
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  26858963 caagtgtttgatgaaatgtttgaatgagtttttcattgat 26859002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 29110932 - 29110987
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  29110932 tgtataatttgcactccaagtgtttgatgaattgtttgaatgagtttttcattgat 29110987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 35491424 - 35491463
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  35491424 caagtgtttgatgaaatgtttgaatgagtttttcattgat 35491463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 995 - 1049
Target Start/End: Original strand, 37058633 - 37058687
Alignment:
Q  995 gtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||||||| |||  ||| |||| |||||||| |||||||||||||||||||||    
T  37058633 gtatattttgcactttaagtgtttaatgaaatgtttgaatgagtttttcattgat 37058687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Original strand, 16581287 - 16581332
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||| ||| |||||    
T  16581287 caagtgtttgatgaaatgtttgaatgagtttttcatcgattttttt 16581332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 7e-68; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 7e-68
Query Start/End: Original strand, 705 - 1049
Target Start/End: Complemental strand, 13707257 - 13706918
Alignment:
Q  705 ccaatctcactcaaatgaatctcatccaatttctttcatcaaaatcaa--aagttatcaactattctacaagtaagtgttaataatctcttctattcaca 802  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||  |||| |||||| ||||||||||||||| |||||||||||||  |||||||    
T  13707257 ccaatcttactcaaacgaatctcatccaatttctttcatcaaaatcaagcaagtcatcaacaattctacaagtaagtattaataatctcttgcattcaca 13707158  T
Q  803 ttgttagttttatataannnnnnnnccttcaaaatttggtggaaatgttagtgtttatgattggataaattattgatattttgggtagtctgtgatccta 902  Q
    ||||| ||| ||||| |          |||||||||| |||| ||| || ||||||||| || |||||||||||||||||||||||||| ||||||| ||    
T  13707157 ttgttggttctatatgatattgttt--ttcaaaatttcgtggcaatttttgtgtttatggttagataaattattgatattttgggtagtttgtgatctta 13707060  T
Q  903 tatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattt 1002  Q
     ||||| ||||| ||||| | ||||||||||| |||| ||||||||||||| | ||||||||||| || ||||||||     ||| |||||||||||| |    
T  13707059 catatgtatgttatgactgt-aatgttgtttagactagatttaagttcaatatggtagtttaaaatttaaaataaca----taatcaatgttgtatatat 13706965  T
Q  1003 tgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    || ||| |||| |||||||| ||||| ||||||||||||||||||||    
T  13706964 tgcacttcaagtgtttgatggaatgcctgaatgagtttttcattgat 13706918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 942 - 1095
Target Start/End: Complemental strand, 34144432 - 34144277
Alignment:
Q  942 tttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttt 1041  Q
    |||||||||||||| || |||||||| ||||||||||||||||||| ||   | | ||||||  ||| |||| |||| ||||||| | ||||||||||||    
T  34144432 tttaagttcaatgtggtcgtttaaaacttgaaataacacaatgaatcaagaatatgtatttttcactccaagtgttttatgaaattcctgaatgagtttt 34144333  T
Q  1042 tcattgatattttt--attgtcttttgttgtgtagatatgactgagaacctacata 1095  Q
    | |||||| |||||  ||||| |||||||||||||||||| |||| |||| |||||    
T  34144332 taattgattttttttcattgttttttgttgtgtagatatggctgacaacccacata 34144277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 947 - 1042
Target Start/End: Original strand, 13933455 - 13933550
Alignment:
Q  947 gttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagttttt 1042  Q
    ||||||| | || ||||| ||||||||||||||||||||||  ||||| | |||||||||||  |||  ||||||||||||| |||||||||||||    
T  13933455 gttcaatatagttgtttacaagttgaaataacacaatgaatcgatgttatttattttgtactttaagtatttgatgaaatgcatgaatgagttttt 13933550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 34595095 - 34595150
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  34595095 tgtataatttgtactacaaatgtttgatgaaatgtttgaatgagtttttcattgat 34595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 15798527 - 15798472
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  15798527 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 15798472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 16418531 - 16418476
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  16418531 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 16418476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 28717846 - 28717901
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||| ||| |||| ||| ||||||||| |||||||||||||||||||||    
T  28717846 tgtatattttgcactccaagtgttagatgaaatgtttgaatgagtttttcattgat 28717901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 1400725 - 1400680
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  1400725 caagtgtttgatgaaatgtttgaatgagtttttcattgattttttt 1400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 3601125 - 3601164
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  3601125 caagtgtttgatgaaatgtttgaatgagtttttcattgat 3601164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 7082060 - 7082115
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  7082060 tgtataatttgcactccaagtgtttgatgaattgtttgaatgagtttttcattgat 7082115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 8537734 - 8537773
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  8537734 caagtgtttgatgaaatgtttgaatgagtttttcattgat 8537773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 12742484 - 12742539
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||| |||||||| |||||||||||||||||||||    
T  12742484 tgtataatttgcacttcaagtgtttaatgaaatgtttgaatgagtttttcattgat 12742539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 12805302 - 12805357
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||| |||||||| |||||||||||||||||||||    
T  12805302 tgtataatttgcacttcaagtgtttaatgaaatgtttgaatgagtttttcattgat 12805357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 943 - 1046
Target Start/End: Complemental strand, 13816817 - 13816714
Alignment:
Q  943 ttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagttttt 1042  Q
    ||||||||||| |||| |||||||||| ||||||| ||||||||| ||  ||||| ||| || ||| ||   ||||||| |||||||| | | |||||||    
T  13816817 ttaagttcaatattgttgtttaaaagtcgaaataatacaatgaattaaaattgtacattctgcactccagatgtttgataaaatgcttcatttagttttt 13816718  T
Q  1043 catt 1046  Q
    ||||    
T  13816717 catt 13816714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 33370422 - 33370477
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| | || ||||||||||||| |||||||||||||||||||||    
T  33370422 tgtataatttgcactccgagtgtttgatgaaatgtttgaatgagtttttcattgat 33370477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 35565056 - 35565095
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  35565056 caagtgtttgatgaaatgtttgaatgagtttttcattgat 35565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 35927859 - 35927820
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  35927859 caagtgtttgatgaaatgtttgaatgagtttttcattgat 35927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Original strand, 2599008 - 2599042
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  2599008 gtttgatgaaatgtttgaatgagtttttcattgat 2599042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 3e-33; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 845 - 1054
Target Start/End: Original strand, 7082317 - 7082526
Alignment:
Q  845 aaatgttagtgtttatgattggataaattattgatattttgggtagtctgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaattt 944  Q
    |||||||| |||||| | ||| ||||||  ||||| |||||| |||| ||||||   |||| || ||||||||  ||||||| ||||||  ||||  |||    
T  7082317 aaatgttaatgtttaaggttgtataaatagttgattttttggttagtttgtgataacatatttgaatgttttggttataaatcttgtttggactaggttt 7082416  T
Q  945 aagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttca 1044  Q
    |||||||||||  | |||||||||||||||||||||||||||| ||  ||||| |||||||||| |||| |||| ||| ||||||||| |||||||||||    
T  7082417 aagttcaatgtgattgtttaaaagttgaaataacacaatgaattaagattgtacattttgtactccaagtgtttaatggaatgcttgattgagtttttca 7082516  T
Q  1045 ttgatatttt 1054  Q
    ||||| ||||    
T  7082517 ttgatttttt 7082526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 945 - 1035
Target Start/End: Complemental strand, 26172317 - 26172227
Alignment:
Q  945 aagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatg 1035  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||  ||   ||||||||| | ||| |||| |||||||||||||||||||||    
T  26172317 aagttcaatgtggtagtttaaaacttgaaataatacaatgaactaagaatgtatatttagcactccaagtgtttgatgaaatgcttgaatg 26172227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 12505156 - 12505101
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  12505156 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 12505101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1045
Target Start/End: Complemental strand, 3589689 - 3589638
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcat 1045  Q
    |||||| |||||||| |||| ||||||||||||| |||||||| ||||||||    
T  3589689 tgtataatttgtactccaagtgtttgatgaaatgtttgaatgaatttttcat 3589638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 8751546 - 8751601
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||| ||||| |||||||||||||||||||||    
T  8751546 tgtataatttgcactccaagtgtttgatcaaatgtttgaatgagtttttcattgat 8751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 16575487 - 16575526
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  16575487 caagtgtttgatgaaatgtttgaatgagtttttcattgat 16575526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 18440714 - 18440675
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  18440714 caagtgtttgatgaaatgtttgaatgagtttttcattgat 18440675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 22843775 - 22843720
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||  |||||||||||||||||||||||||||||||    
T  22843775 tgtataatttgcactccaagtgtccgatgaaatgcttgaatgagtttttcattgat 22843720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 24861138 - 24861177
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  24861138 caagtgtttgatgaaatgtttgaatgagtttttcattgat 24861177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 26452120 - 26452159
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  26452120 caagtgtttgatgaaatgtttgaatgagtttttcattgat 26452159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 37780438 - 37780477
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  37780438 caagtgtttgatgaaatgtttgaatgagtttttcattgat 37780477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 40702155 - 40702194
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  40702155 caagtgtttgatgaaatgtttgaatgagtttttcattgat 40702194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 41275189 - 41275228
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  41275189 caagtgtttgatgaaatgtttgaatgagtttttcattgat 41275228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 41857393 - 41857354
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  41857393 caagtgtttgatgaaatgtttgaatgagtttttcattgat 41857354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 42603249 - 42603288
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  42603249 caagtgtttgatgaaatgtttgaatgagtttttcattgat 42603288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 4e-23; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 703 - 859
Target Start/End: Original strand, 2484435 - 2484591
Alignment:
Q  703 ctccaatctcactcaaatgaatctcatccaatttctttcatcaaaatcaa--aagttatcaactattctacaagtaagtgttaataatctcttctattca 800  Q
    ||||||||||||||||| |||| ||||||||||| |||||| ||||||||  |||| |||||| ||| |  |||||||| ||||||||| |||||| |||    
T  2484435 ctccaatctcactcaaacgaatatcatccaatttgtttcattaaaatcaagcaagtcatcaacaattatgaaagtaagtattaataatcccttctactca 2484534  T
Q  801 cattgttagttttatataannnnnnnnccttcaaaatttggtggaaatgttagtgttta 859  Q
    ||||||||||||||||  |          ||||||||||||||||||||||||||||||    
T  2484535 cattgttagttttatacgatatcgttt--ttcaaaatttggtggaaatgttagtgttta 2484591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 945 - 1049
Target Start/End: Complemental strand, 8351944 - 8351840
Alignment:
Q  945 aagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttca 1044  Q
    ||||||||||| ||||||||||| ||||||||||||||||||   ||  ||||||||| | |||||| | |||||||||||||||||||||||||||| |    
T  8351944 aagttcaatgtggtagtttaaaacttgaaataacacaatgaactcataatgtatatttagcactacatgtgtttgatgaaatgcttgaatgagtttttta 8351845  T
Q  1045 ttgat 1049  Q
    |||||    
T  8351844 ttgat 8351840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 830 - 930
Target Start/End: Complemental strand, 34868085 - 34867983
Alignment:
Q  830 ttcaaaatttggtggaaatgttagtgtttatgattggataaattattgatattttgggtagtctgtgatcc--tatatatgcatgttttgactataaatg 927  Q
    |||||||| || ||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||  | |||||||||||||||| | ||||||    
T  34868085 ttcaaaatatgatggaaatgttagtgtttagaattgaataaactattgatattttgggtagtctgtgatccagtgtatatgcatgttttgattgtaaatg 34867986  T
Q  928 ttg 930  Q
    |||    
T  34867985 ttg 34867983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 942 - 1041
Target Start/End: Complemental strand, 893601 - 893502
Alignment:
Q  942 tttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttt 1041  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||| |||||| ||||   |||| ||||||||||||| |||||||||||||    
T  893601 tttaagttcaatgtggttgtttaaaatttgaaataatacaatgaatcaatgttatatattatgtatctcaagtgtttgatgaaatgtttgaatgagtttt 893502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 893 - 1055
Target Start/End: Complemental strand, 37614677 - 37614516
Alignment:
Q  893 tgtgatcctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatg 992  Q
    |||||||  |||| |||||||||||||| ||||||||||||| ||||||||||| | ||||   ||||||||||| |||||| || ||||||||| ||      
T  37614677 tgtgatcaaatatttgcatgttttgactgtaaatgttgtttagactaaatttaactacaattaggtagtttaaaa-ttgaaacaatacaatgaatcaagt 37614579  T
Q  993 ttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
     |||||||||||| || |||| |||  ||||||||| | | |||||| ||||||||| |||||    
T  37614578 atgtatattttgtgcttcaagtgttaaatgaaatgcctcagtgagttgttcattgattttttt 37614516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 23124970 - 23124915
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  23124970 tgtatattttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 23124915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 44100114 - 44100169
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  44100114 tgtataatttgtactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 44100169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1294 - 1342
Target Start/End: Original strand, 18049941 - 18049989
Alignment:
Q  1294 ttgtttctttctacatctgctgcacaattcacaaatcatgattttgatg 1342  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||||    
T  18049941 ttgtttctttctacatctgttgtacaattcacaaatcatcattttgatg 18049989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 3510867 - 3510812
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||| ||| |||| ||||||||||||| |||||||| ||||||||||||    
T  3510867 tgtatattttgcactccaagtgtttgatgaaatgtttgaatgaatttttcattgat 3510812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 20759575 - 20759520
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  20759575 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 20759520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 20765966 - 20765911
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  20765966 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 20765911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 32938340 - 32938285
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  32938340 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 32938285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 813
Target Start/End: Complemental strand, 34919138 - 34919060
Alignment:
Q  737 ctttcatcaaaatcaa--aagttatcaactattctacaagtaagtgttaataatctcttctattcacattgttagtttt 813  Q
    ||||||| ||||||||  |||| |||||| | ||||||||||||| |||||||||  || |||||||||||||||||||    
T  34919138 ctttcattaaaatcaagcaagtcatcaacaactctacaagtaagtattaataatcatttgtattcacattgttagtttt 34919060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 994 - 1048
Target Start/End: Original strand, 24074875 - 24074929
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattga 1048  Q
    |||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  24074875 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattga 24074929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 29699736 - 29699691
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  29699736 caagtgtttgatgaaatgtttgaatgagtttttcattgattttttt 29699691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 49424181 - 49424136
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  49424181 caagtgtttgatgaaatgtttgaatgagtttttcattgattttttt 49424136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1001 - 1049
Target Start/End: Original strand, 1225936 - 1225984
Alignment:
Q  1001 tttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  1225936 tttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 1225984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 957877 - 957838
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  957877 caagtgtttgatgaaatgtttgaatgagtttttcattgat 957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 1042536 - 1042575
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  1042536 caagtgtttgatgaaatgtttgaatgagtttttcattgat 1042575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 6282745 - 6282706
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  6282745 caagtgtttgatgaaatgtttgaatgagtttttcattgat 6282706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 9489464 - 9489503
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  9489464 caagtgtttgatgaaatgtttgaatgagtttttcattgat 9489503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 12587416 - 12587471
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||| ||| |||| ||||||||||||| |||||||| ||||| ||||||    
T  12587416 tgtatattttgcactccaagtgtttgatgaaatgtttgaatgaattttttattgat 12587471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 14331132 - 14331077
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  14331132 tgtataatttgcactccaagtgtttgatgaattgtttgaatgagtttttcattgat 14331077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 17211035 - 17211090
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| ||| |||||||||||||||||    
T  17211035 tgtataatttgcacttcaagtgtttgatgaaatgtttgtatgagtttttcattgat 17211090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 20779307 - 20779252
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  20779307 tgtataatttgcactccaagtgtttgatgaactgtttgaatgagtttttcattgat 20779252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 21711329 - 21711384
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  21711329 tgtataatttgcactccaagtgtttgatgaattgtttgaatgagtttttcattgat 21711384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 24606537 - 24606576
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  24606537 caagtgtttgatgaaatgtttgaatgagtttttcattgat 24606576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 28082023 - 28082062
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  28082023 caagtgtttgatgaaatgtttgaatgagtttttcattgat 28082062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 34153710 - 34153671
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  34153710 caagtgtttgatgaaatgattgaatgagtttttcattgat 34153671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 44560602 - 44560563
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  44560602 caagtgtttgatgaaatgtttgaatgagtttttcattgat 44560563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Complemental strand, 12227905 - 12227871
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  12227905 gtttgatgaaatgtttgaatgagtttttcattgat 12227871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Original strand, 39588719 - 39588753
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  39588719 gtttgatgaaatgtttgaatgagtttttcattgat 39588753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1016 - 1049
Target Start/End: Original strand, 42420833 - 42420866
Alignment:
Q  1016 tttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||||||||| |||||||||||||||||||||    
T  42420833 tttgatgaaatgtttgaatgagtttttcattgat 42420866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 6e-22; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 924 - 1002
Target Start/End: Complemental strand, 31245651 - 31245573
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattt 1002  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  31245651 aatgttgtttagactagatttaagttcaatgtggtagtttaaaacttgaaataatacaatgaatcaatgttgtatattt 31245573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 21150281 - 21150178
Alignment:
Q  1 ttggaatccattataaatgaaactgctgtcttcacttgctactaatgtaacatgaaaaaacaacatgaacacatgtctgaggaacatgattctaggttgt 100  Q
    ||||||||||||||| ||||||||| | |||||||||||||| ||||||||| ||  ||||||||| |||||| |  |||||||||||||| ||| ||||    
T  21150281 ttggaatccattatagatgaaactgttatcttcacttgctaccaatgtaacaagattaaacaacataaacacaagcttgaggaacatgattatagtttgt 21150182  T
Q  101 gaat 104  Q
    ||||    
T  21150181 gaat 21150178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 958 - 1047
Target Start/End: Original strand, 30973752 - 30973841
Alignment:
Q  958 tagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattg 1047  Q
    |||||||||||||||||||||||| ||||| |||||| |||||| |  ||| |||| ||||||| ||||| || ||||| ||||||||||    
T  30973752 tagtttaaaagttgaaataacacagtgaattaatgttttatattctacactccaagtgtttgataaaatggttaaatgaatttttcattg 30973841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 21760805 - 21760750
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  21760805 tgtataatttgcacttcaagtgtttgatgaaatgtttgaatgagtttttcattgat 21760750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 26793077 - 26793132
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||||||| |||| ||||||||||||| |||||||| ||||||||||||    
T  26793077 tgtataatttgtactccaagtgtttgatgaaatgtttgaatgaatttttcattgat 26793132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 39900342 - 39900287
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||||    
T  39900342 tgtatattttgcactacaagtgtttgatgaaatgtttgaatgagtatttctttgat 39900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Original strand, 36909346 - 36909391
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  36909346 caagtgtttgatgaaatgtttgaatgagtttttcattgattttttt 36909391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 994 - 1046
Target Start/End: Complemental strand, 21485071 - 21485019
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcatt 1046  Q
    |||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||    
T  21485071 tgtataatttgcactgcaagtgtttgatgaaatgtttgaatgagtttttcatt 21485019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1294 - 1342
Target Start/End: Original strand, 32502890 - 32502938
Alignment:
Q  1294 ttgtttctttctacatctgctgcacaattcacaaatcatgattttgatg 1342  Q
    ||||||||||||||||||  || |||||||||||||||| |||||||||    
T  32502890 ttgtttctttctacatctattgtacaattcacaaatcatcattttgatg 32502938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 4209036 - 4209075
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  4209036 caagtgtttgatgaaatgtttgaatgagtttttcattgat 4209075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 5764975 - 5765030
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||| ||||||    
T  5764975 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagttttttattgat 5765030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 13972710 - 13972749
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  13972710 caagtgtttgatgaaatgtttgaatgagtttttcattgat 13972749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 16077577 - 16077632
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| | |||| | ||||||||||||| |||||||||||||||||||||    
T  16077577 tgtataatttgcattacaggtgtttgatgaaatgtttgaatgagtttttcattgat 16077632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 16532478 - 16532423
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||| ||||||||||||||||    
T  16532478 tgtataatttgcactccaagtgtttgatgaaatgtttgactgagtttttcattgat 16532423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 19262798 - 19262759
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  19262798 caagtgtttgatgaaatgtttgaatgagtttttcattgat 19262759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 24364189 - 24364150
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  24364189 caagtgtttgatgaaatgtttgaatgagtttttcattgat 24364150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 27259714 - 27259753
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  27259714 caagtgtttgatgaaatgtttgaatgagtttttcattgat 27259753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 34335972 - 34336027
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| |||  ||| ||||||||||||| |||||||||||||||||||||    
T  34335972 tgtataatttgcactctaagtgtttgatgaaatgtttgaatgagtttttcattgat 34336027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 39224634 - 39224579
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  39224634 tgtataatttgcactccaagtgtttgatgaattgtttgaatgagtttttcattgat 39224579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 44337740 - 44337701
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  44337740 caagtgtttgatgaaatgtttgaatgagtttttcattgat 44337701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 44597486 - 44597525
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  44597486 caagtgtttgatgaaatgattgaatgagtttttcattgat 44597525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 48707353 - 48707298
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| | ||||||||||| |||||||||||||||||||||    
T  48707353 tgtataatttgcactccaagtgcttgatgaaatgtttgaatgagtttttcattgat 48707298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 49396489 - 49396528
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  49396489 caagtgtttgatgaaatgtttgaatgagtttttcattgat 49396528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 49427173 - 49427212
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  49427173 caagtgtttgatgaaatgtttgaatgagtttttcattgat 49427212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 1088
Target Start/End: Complemental strand, 16243232 - 16243070
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactac-aagcgtttgatg 1022  Q
    ||||||||||||| ||  |||| || |||| | || || || |||||||| ||||||||||||| | |||| ||| ||||| | ||| ||| |||||||     
T  16243232 aatgttgtttaaagtatgtttatgtacaatctggttgtgtagaagttgaattaacacaatgaatcattgttttatcttttgca-tacaaagtgtttgata 16243134  T
Q  1023 aaatgcttgaatgagtttttcattgatatttttattgtcttttgttgtgtagatatgactgagaac 1088  Q
    |||||| | ||||| | |||||||||| |||||||| | |||  ||||||||||||| ||| ||||    
T  16243133 aaatgcctaaatgaatatttcattgatttttttattttgttt--ttgtgtagatatggctgggaac 16243070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 897 - 975
Target Start/End: Original strand, 37588314 - 37588392
Alignment:
Q  897 atcctatatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaat 975  Q
    |||| ||||| ||||||||||| | ||||||||||||| ||||  ||  |||| ||| ||||||||||||| |||||||    
T  37588314 atcccatatacgcatgttttgaatgtaaatgttgtttagactaggttatagtttaatattgtagtttaaaaattgaaat 37588392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1015 - 1056
Target Start/End: Complemental strand, 14174174 - 14174133
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgatattttta 1056  Q
    ||||||||||||| |||||||||||| |||||||| ||||||    
T  14174174 gtttgatgaaatgtttgaatgagtttctcattgattttttta 14174133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 924 - 1055
Target Start/End: Complemental strand, 11091401 - 11091270
Alignment:
Q  924 aatgttgtttaaactaaatttaagttcaatgttgtagtttaaaagttgaaataacacaatgaataaatgttgtatattttgtactacaagcgtttgatga 1023  Q
    |||||||||| |||||| ||||| | |||||| | ||||||||| ||  |||||||||||||| |||   |||||||||||  || |||| |||||||||    
T  11091401 aatgttgtttgaactaactttaaatgcaatgtgggagtttaaaaattctaataacacaatgaacaaagtatgtatattttgcgcttcaagagtttgatga 11091302  T
Q  1024 aatgcttgaatgagtttttcattgatattttt 1055  Q
    ||||  | ||||| |||| ||||||| |||||    
T  11091301 aatgtctcaatgaattttacattgattttttt 11091270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1045
Target Start/End: Complemental strand, 5973459 - 5973408
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcat 1045  Q
    |||||| |||||||| |||| ||||||||||||| |||||||||||||||||    
T  5973459 tgtataatttgtacttcaagtgtttgatgaaatgtttgaatgagtttttcat 5973408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 20242571 - 20242516
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| | |||||| ||||||||||||| |||||||||||||||||||||    
T  20242571 tgtataatttgcattacaagtgtttgatgaaatgtttgaatgagtttttcattgat 20242516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 22136555 - 22136500
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| | |||||| ||||||||||||| |||||||||||||||||||||    
T  22136555 tgtataatttgcattacaagtgtttgatgaaatgtttgaatgagtttttcattgat 22136500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 998 - 1049
Target Start/End: Original strand, 33718835 - 33718886
Alignment:
Q  998 tattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  33718835 tattttgcacttcaagtgtttgatgaaatgtttgaatgagtttttcattgat 33718886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 34132355 - 34132410
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  34132355 tgtataatttgcacttcaagtgtttgatgaaatgtttgaatgagtttttcattgat 34132410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 994 - 1048
Target Start/End: Complemental strand, 3097942 - 3097888
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattga 1048  Q
    |||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  3097942 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattga 3097888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 3766141 - 3766096
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||    
T  3766141 caagtgtttgatgaaatgtttgaatgagtttttcattgatagtttt 3766096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 34803316 - 34803271
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  34803316 caagtgtttgatgaaatgtttgaatgagtttttcattgattttttt 34803271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 993 - 1049
Target Start/End: Complemental strand, 18744399 - 18744343
Alignment:
Q  993 ttgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||| |||  ||| |||| ||||||||||||| |||||||||||||||||||||    
T  18744399 ttgtataattttcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 18744343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 13402322 - 13402361
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  13402322 caagtgtttgatgaaatgtttgaatgagtttttcattgat 13402361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 17465712 - 17465657
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||| ||||    
T  17465712 tgtatagtttgaactccaagtgtttgatgaaatgtttgaatgagtttttcaatgat 17465657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1294 - 1342
Target Start/End: Complemental strand, 4395385 - 4395337
Alignment:
Q  1294 ttgtttctttctacatctgctgcacaattcacaaatcatgattttgatg 1342  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||||    
T  4395385 ttgtttctttctacatctgttgtacaattcacaaatcatcattttgatg 4395337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 25156294 - 25156239
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||||||| |||| ||||||||||||| |||||||| ||||||||||||    
T  25156294 tgtataatttgtactccaagtgtttgatgaaatgtttgaatgattttttcattgat 25156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 33449578 - 33449523
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  33449578 tgtataatttgcactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 33449523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 994 - 1055
Target Start/End: Original strand, 4095565 - 4095626
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||||| |||| |||  ||| ||||||||||||| ||||||||||||||||||||| |||||    
T  4095565 tgtataatttgcactcaaagtgtttgatgaaatgtttgaatgagtttttcattgattttttt 4095626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1005 - 1049
Target Start/End: Original strand, 7953997 - 7954041
Alignment:
Q  1005 tactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||    
T  7953997 tactccaagtgtttgatgaaatgtttgaatgagtttttcattgat 7954041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 4004507 - 4004468
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  4004507 caagtgtttgatgaaatgtttgaatgagtttttcattgat 4004468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 6464765 - 6464726
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  6464765 caagtgtttgatgaaatgtttgaatgagtttttcattgat 6464726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 24702691 - 24702652
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  24702691 caagtgtttgatgaaatgtttgaatgagtttttcattgat 24702652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Complemental strand, 29635358 - 29635303
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||| ||||||||||||    
T  29635358 tgtataatttgcacttcaagtgtttgatgaaatgtttgaatgactttttcattgat 29635303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 37281235 - 37281290
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| |||||||||| || |||||||||||||||||||||    
T  37281235 tgtataatttgcactccaagtgtttgatgaattgtttgaatgagtttttcattgat 37281290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 41577727 - 41577766
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  41577727 caagtgtttgatgaaatgtttgaatgagtttttcattgat 41577766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 49219156 - 49219117
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  49219156 caagtgtttgatgaaatgtttgaatgagtttttcattgat 49219117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 49610288 - 49610327
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  49610288 caagtgtttgatgaaatgtttgaatgagtttttcattgat 49610327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 52569828 - 52569789
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  52569828 caagtgtttgatgaaatgtttgaatgagtttttcattgat 52569789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Complemental strand, 774753 - 774719
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  774753 gtttgatgaaatgtttgaatgagtttttcattgat 774719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Complemental strand, 2268908 - 2268874
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  2268908 gtttgatgaaatgtttgaatgagtttttcattgat 2268874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1015 - 1049
Target Start/End: Original strand, 17370605 - 17370639
Alignment:
Q  1015 gtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||||| |||||||||||||||||||||    
T  17370605 gtttgatgaaatgtttgaatgagtttttcattgat 17370639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 902 - 1047
Target Start/End: Complemental strand, 33427082 - 33426934
Alignment:
Q  902 atatatgcatgttttgactataaatgttgtttaaactaaatttaagttcaatgttgtagtttaaa---agttgaaataacacaatgaataaatgttgtat 998  Q
    |||| ||||||| || ||| | |||||||||| ||| || ||||| | |||||| ||||||||||   | |||||||||||||||||  |||   |||||    
T  33427082 atatttgcatgtattaactgtgaatgttgtttgaaccaagtttaaatgcaatgtggtagtttaaaaataattgaaataacacaatgatcaaagtatgtat 33426983  T
Q  999 attttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattg 1047  Q
    |||||||  |  ||| ||||||||||||| || ||| | ||||||||||    
T  33426982 attttgtgttctaagtgtttgatgaaatgtttcaataaatttttcattg 33426934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 13896290 - 13896245
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| ||||||||||||||||| ||| |||||    
T  13896290 caagtgtttgatgaaatgtttgaatgagtttttcatcgattttttt 13896245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1016 - 1049
Target Start/End: Original strand, 15636829 - 15636862
Alignment:
Q  1016 tttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||||||||| |||||||||||||||||||||    
T  15636829 tttgatgaaatgtttgaatgagtttttcattgat 15636862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1055
Target Start/End: Complemental strand, 45100886 - 45100841
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgatattttt 1055  Q
    |||| ||||||||||||| |||||||||||||||||| || |||||    
T  45100886 caagtgtttgatgaaatgtttgaatgagtttttcattaattttttt 45100841  T

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Target: scaffold0181 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 24676 - 24731
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||    
T  24676 tgtataatttgcacttcaagtgtttgatgaaatgtttgaatgagtttttcattgat 24731  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 994 - 1049
Target Start/End: Original strand, 777 - 832
Alignment:
Q  994 tgtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||||||||| ||| |||| ||||||| ||||| |||||||||||||| ||||||    
T  777 tgtatattttgcactccaagtgtttgattaaatgtttgaatgagttttttattgat 832  T

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Target: scaffold0192 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Complemental strand, 18314 - 18275
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  18314 caagtgtttgatgaaatgtttgaatgagtttttcattgat 18275  T

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Target: scaffold0176 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1010 - 1049
Target Start/End: Original strand, 1577 - 1616
Alignment:
Q  1010 caagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  1577 caagtgtttgatgaaatgtttgaatgagtttttcattgat 1616  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 995 - 1049
Target Start/End: Original strand, 39647 - 39701
Alignment:
Q  995 gtatattttgtactacaagcgtttgatgaaatgcttgaatgagtttttcattgat 1049  Q
    ||||| |||| ||| |||| ||||||||||||| |||||||||||||| ||||||    
T  39647 gtataatttgcactccaagtgtttgatgaaatgtttgaatgagttttttattgat 39701  T

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