View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_high_15 (Length: 431)
Name: NF2552_high_15
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 38048721 - 38049141
Alignment:
| Q |
11 |
cataggtggcattgcaagttgcaataaagctattacaagatagatgatccataagctatgtgaccgagtaaagggccaaacaattgactagaagaaaact |
110 |
Q |
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| T |
38048721 |
cataggtggcattgcaagttgcaacaaagctattacaagatagaagatccataagctatgtgaccgagtaaagggccaaacaattgactagaagaaaact |
38048820 |
T |
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| Q |
111 |
gttaaagcaattgtaagttgtaagtgtgctatactgatattcccatggaaggacgttttcttccttgaggttcttcaaccaataaaatcatcgaattttc |
210 |
Q |
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| T |
38048821 |
gttaaagcacttgtaagttgtaagtgtgctatactgatattcccatggaaggacgttttcttccttgaggttcttcaacaaataaaatcatcgaattttc |
38048920 |
T |
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| Q |
211 |
tttactggaattcctatcaacctagttgtttctctggtccgtggtcccaaacagatacaaataccaaaccaaaacaagttgatcaacttccatcactctt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38048921 |
attactggaattcctatcaacctagttgtttctctggtccgtggtcccaaacagatacaaataccaaaccaaaacaagttgatcaacttccatcactctt |
38049020 |
T |
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| Q |
311 |
gtttgcatactaaatcaactaaaacatctcaatatcacacacattgccaatattgttacttaaaggcagaaattgtaatagagtagatgcaactaggtaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38049021 |
gtttgcatactaaatcaactaaaacatctcaatatcacacacattgccaatattgttacttaaaggcagaaattgtaatagagtagatgcaactaggtaa |
38049120 |
T |
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| Q |
411 |
ataaataccataaccaactac |
431 |
Q |
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| T |
38049121 |
ataaataccataaccaactac |
38049141 |
T |
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