View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_high_17 (Length: 408)
Name: NF2552_high_17
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 49991353 - 49991750
Alignment:
| Q |
11 |
cataggctaaaactcattccttattggtgatggatggtaaaaccacgtcaagaggaatttttaaaaaatttcataaaagaaagaatatatgcagtaaact |
110 |
Q |
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| T |
49991353 |
cataggctaaaactcattccttattggtgatggatggtaaacccacgtcaagaggaatttttaaattttttcataaaagaaagaatatatgcagtaaact |
49991452 |
T |
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| Q |
111 |
ttatcaattatttagatttgtaaaggtacatcaatttgcaaaatcttgacacgtttcattgagaatatgactgcatttctttattgagggatggaaatat |
210 |
Q |
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| T |
49991453 |
ttatcaattatttagatttgtaaaggtacatcaatttgcaaaatcttgacacgtttcattgagaatatgactgcatttctttattgagggatggaaatat |
49991552 |
T |
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| Q |
211 |
agtttgtgtcccgcttattgggaagcatagatgcaagaaaagatccttgtctcgcatgtcttctattttattttttaaaatttaaataagattcttgatt |
310 |
Q |
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| T |
49991553 |
agtttgtgtcccgcttattgggaagcatagatgcaagaaaagatccttgtctcgcatgtcttctattttattttttaaaatttaaataagattcttgatt |
49991652 |
T |
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| Q |
311 |
tttggtaagatgtaatctatacaaaaaccacaatgttagagattggtgcattggatccttggcaagtcgcagcaaagacatcaatcataaacaataga |
408 |
Q |
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| T |
49991653 |
tttggtaagatgtaatctatacaaaaaccacaatgttagagattggtgcattggatccttggcaagtcgcagcaaacacatcaatcataaacaataga |
49991750 |
T |
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