View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_high_20 (Length: 391)

Name: NF2552_high_20
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_high_20
NF2552_high_20
[»] chr4 (8 HSPs)
chr4 (19-111)||(9135383-9135475)
chr4 (178-238)||(9135539-9135599)
chr4 (343-389)||(42250954-42251000)
chr4 (343-384)||(18304047-18304088)
chr4 (343-391)||(9135722-9135770)
chr4 (343-391)||(21076366-21076414)
chr4 (343-391)||(44199284-44199332)
chr4 (343-391)||(46080080-46080128)
[»] chr7 (4 HSPs)
chr7 (322-391)||(48897189-48897264)
chr7 (343-384)||(6942998-6943039)
chr7 (323-389)||(11846468-11846538)
chr7 (343-391)||(35358676-35358724)
[»] chr1 (4 HSPs)
chr1 (319-384)||(13902798-13902869)
chr1 (322-391)||(4414422-4414497)
chr1 (343-391)||(17865056-17865104)
chr1 (343-391)||(36631480-36631528)
[»] scaffold0136 (1 HSPs)
scaffold0136 (323-391)||(36104-36178)
[»] chr2 (5 HSPs)
chr2 (340-391)||(34067511-34067562)
chr2 (322-391)||(18859749-18859824)
chr2 (343-391)||(5203499-5203547)
chr2 (343-391)||(11829424-11829472)
chr2 (343-391)||(18696198-18696246)
[»] chr6 (1 HSPs)
chr6 (341-391)||(25385917-25385967)
[»] scaffold0862 (1 HSPs)
scaffold0862 (343-391)||(1602-1650)
[»] scaffold0087 (1 HSPs)
scaffold0087 (343-391)||(42709-42757)
[»] chr8 (2 HSPs)
chr8 (343-391)||(27408110-27408158)
chr8 (343-391)||(43324276-43324324)
[»] chr5 (1 HSPs)
chr5 (343-391)||(30668328-30668376)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 9135383 - 9135475
Alignment:
Q  19 ggagaaaccgaattggaacaagcagcttgtgggtgaatgcaagaagagatcctttgtcccatgttttcgaaaagggtttgttttttagggttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9135383 ggagaaaccgaattggaacaagcagcttgtgggtgaatgcaagaagagatcctttgtcccatgttttcaaaaagggtttgttttttagggttt 9135475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 9135539 - 9135599
Alignment:
Q  178 caatttctgtttcgtacgctaacgcggttataaatcaacgttacttgctcaacaaggatcc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9135539 caatttctgtttcgtacgctaacgcggttataaatcaacgttacttgctcaacaaggatcc 9135599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 42251000 - 42250954
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatatt 389  Q
    |||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  42251000 tatataagtcatgttatacaattgaataacaagcccttaattctatt 42250954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 18304047 - 18304088
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaatt 384  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  18304047 tatataagtcatgttatactgttgaataacaagcccttaatt 18304088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 9135722 - 9135770
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||| |||||| ||||||||| ||| |||||||| ||||||    
T  9135722 tatataagtcatattatactgttgaataacaagcccttaattctattct 9135770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 21076366 - 21076414
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  21076366 tatataagtcatgttatactattgaataacaagcccttaattctattct 21076414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 44199332 - 44199284
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||| |||||||||| ||  |||||||| ||||||    
T  44199332 tatataagtcatgttatatagttgaataacaaacccttaattctattct 44199284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 46080128 - 46080080
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  46080128 tatataagtcatgttatactattgaataacaagcccttaattctattct 46080080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 48897264 - 48897189
Alignment:
Q  322 gatacaatggatattgattga------tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||||      ||||||||||||||||||| ||||||||| ||| |||||||| ||||||    
T  48897264 gatacaatggatattgattgacaccggtatataagtcatgttatactgttgaataacaagcccttaattctattct 48897189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 6943039 - 6942998
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaatt 384  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  6943039 tatataagtcatgttatactgttgaataacaagcccttaatt 6942998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 11846538 - 11846468
Alignment:
Q  323 atacaatggatattgattga----tatataagtcatgttatacagttgaataataagtccttaattatatt 389  Q
    ||||||||||| ||||||||    ||||||||||||||||||| ||||||||| ||  |||||||| ||||    
T  11846538 atacaatggattttgattgacacctatataagtcatgttatactgttgaataacaaacccttaattctatt 11846468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 35358724 - 35358676
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  35358724 tatataagtcatgttatactattgaataagaagcccttaattctattct 35358676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 13902869 - 13902798
Alignment:
Q  319 catgatacaatggatattgattga------tatataagtcatgttatacagttgaataataagtccttaatt 384  Q
    ||||||||||||||||||||||||      ||||||||||||||||||| ||||||||| ||| ||||||||    
T  13902869 catgatacaatggatattgattgacaccggtatataagtcatgttatactgttgaataacaagcccttaatt 13902798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 4414422 - 4414497
Alignment:
Q  322 gatacaatggatattgattga------tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||||      |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  4414422 gatacaatggatattgattgacaccggtatataagtcatgttatactattgaataacaagcccttaattctattct 4414497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 17865104 - 17865056
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    ||||||||||||||||||| ||||||||| ||  |||||||| ||||||    
T  17865104 tatataagtcatgttatactgttgaataacaaagccttaattctattct 17865056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 36631480 - 36631528
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  36631480 tatataagtcatgttatactattgaataacaagcccttaattctattct 36631528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 36104 - 36178
Alignment:
Q  323 atacaatggatattgattga------tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    ||||||||||||||||||||      ||||||||||||||||||| ||||||||| ||| |||||||| ||||||    
T  36104 atacaatggatattgattgacaccggtatataagtcatgttatactgttgaataacaagcccttaattctattct 36178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 34067562 - 34067511
Alignment:
Q  340 tgatatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||||  ||||||||| |||||||||||| ||||||    
T  34067562 tgatatataagtcatgttatattgttgaataacaagtccttaattctattct 34067511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 18859824 - 18859749
Alignment:
Q  322 gatacaatggatattgattga------tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||||      |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  18859824 gatacaatggatattgattgacaccggtatataagtcatgttatactattgaataacaagcccttaattctattct 18859749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 5203499 - 5203547
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  5203499 tatataagtcatgttatactattgaataacaagcccttaattctattct 5203547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 11829424 - 11829472
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    ||||||||||||||||||| ||||||||| ||| | |||||| ||||||    
T  11829424 tatataagtcatgttatactgttgaataacaagcctttaattttattct 11829472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 18696246 - 18696198
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  18696246 tatataagtcatgttatactattgaataacaagcccttaattctattct 18696198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 25385917 - 25385967
Alignment:
Q  341 gatatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    ||||||||||||||||||||  ||||||||| ||| |||||||| ||||||    
T  25385917 gatatataagtcatgttatattgttgaataacaagcccttaattctattct 25385967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 1650 - 1602
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||   ||||||| |||||||||||| ||||||    
T  1650 tatataagtcatgttatactactgaataagaagtccttaattctattct 1602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 42709 - 42757
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  42709 tatataagtcatgttatactattgaataaaaagcccttaattctattct 42757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 27408158 - 27408110
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    ||||||||||||||||||| ||||||||| ||| | |||||| ||||||    
T  27408158 tatataagtcatgttatactgttgaataaaaagcctttaattctattct 27408110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 43324276 - 43324324
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||  |||||||||||||||    
T  43324276 tatataagtcatgttatactattgaataagaaacccttaattatattct 43324324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 30668376 - 30668328
Alignment:
Q  343 tatataagtcatgttatacagttgaataataagtccttaattatattct 391  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  30668376 tatataagtcatgttatactattgaataagaagcccttaattctattct 30668328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University