View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_high_28 (Length: 304)
Name: NF2552_high_28
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 45103335 - 45103032
Alignment:
| Q |
1 |
aattattgtaattgtggaccgtattgccaaacattaggtcggcccaatatgtggcccgtatacaatgtgggtcaggtgacttgaggtccgattgagatga |
100 |
Q |
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| T |
45103335 |
aattattgtaattgtggaccgtattgccaaacattaggtcgccccaatatgtggcccgtatacaatgtgggtcaggtgacttgaggtccgattgagatga |
45103236 |
T |
|
| Q |
101 |
gacatggtattggtaggaatcaatggcatcatgcataccatcatgtagatgtagagacttctaaaattttgttaggctatggaaaagaatatgttcataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | || |
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| T |
45103235 |
gacatggtattggtaggaatcaatggcatcatgcataccatcatgtagatgtagagacttctagaattttgttaggcaatggaaaagaatatgtttagaa |
45103136 |
T |
|
| Q |
201 |
gaaagaaacaagcgagaaagaacaaagaaataaagtg-nnnnnnncttct-ttttgtatcatttagtataagaaaaagagaagtgaaaatgaagaaaatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103135 |
gaaagaaacaagcgagaaagaacaaagaaataaattgtttttttttttctcttttgtatcatttagtataagaaaaagagaagtgaaaatgaagaaaatc |
45103036 |
T |
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| Q |
299 |
atgt |
302 |
Q |
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|||| |
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| T |
45103035 |
atgt |
45103032 |
T |
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