View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_high_32 (Length: 270)

Name: NF2552_high_32
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_high_32
NF2552_high_32
[»] chr7 (13 HSPs)
chr7 (1-256)||(31048587-31048842)
chr7 (11-252)||(31106348-31106572)
chr7 (87-252)||(31061073-31061238)
chr7 (111-252)||(31143677-31143818)
chr7 (111-252)||(31161503-31161644)
chr7 (111-252)||(31243606-31243747)
chr7 (118-251)||(31203555-31203688)
chr7 (11-75)||(31161346-31161410)
chr7 (11-75)||(31243449-31243513)
chr7 (11-75)||(31143522-31143586)
chr7 (94-177)||(31161412-31161495)
chr7 (94-177)||(31243515-31243598)
chr7 (94-177)||(31143588-31143669)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 31048587 - 31048842
Alignment:
Q  1 agcaacaagtacaacaacaaaatcgatgaaataacataagcatactagtataatccaataataccacattaaatccaactatttggaataatctttcatt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31048587 agcaacaagtacaacaacaaaatcgatgaaataacagaagcatactagtataatccaataataccacattaaatccaactatttggaataatctttcatt 31048686  T
Q  101 tgcgttgaacagtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31048687 tgcgttgaacagtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttg 31048786  T
Q  201 cacaataacttgaaatttcttcttttcaccatttttcttgaatgtcaaggaatctg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31048787 cacaataacttgaaatttcttcttttcaccatttttcttgaatgtcaaggaatctg 31048842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 31106348 - 31106572
Alignment:
Q  11 acaacaacaaaatcgatgaaataacataagcatactagtataatccaataataccacattaaatccaactatttggaataatctttcatttgcgttgaac 110  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||                 |||||||||||  ||||    
T  31106348 acaacaacaaaatcgatgaaataacaaaagcagactagtataatccaataataacacattaaatcc-----------------tttcatttgcgccgaac 31106430  T
Q  111 agtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttgcacaataact 210  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | | |||||||||||||||| |||||||||||||||||    
T  31106431 agtaacaggactccttacaatgtgttttccatttgtccatcgcagttccccaaattggtatttcctccttggagtcacacttgttgcttgcacaataact 31106530  T
Q  211 tgaaatttcttcttttcaccatttttcttgaatgtcaaggaa 252  Q
    |||||| |||||||||||||  ||||||||||  ||||||||    
T  31106531 tgaaatgtcttcttttcacctattttcttgaaattcaaggaa 31106572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 31061073 - 31061238
Alignment:
Q  87 aataatctttcatttgcgttgaacagtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtc 186  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||  || |||||||||||||||| | | ||||||| ||    
T  31061073 aataatctttcatttgcgttgaacagtaacggggctccttacgatgtgttttccatttgtccatctcaattctccaaattggtatttcctccttggaatc 31061172  T
Q  187 acacttcttgcttgcacaataacttgaaatttcttcttttcaccatttttcttgaatgtcaaggaa 252  Q
     ||||| ||||||| ||||||||||||||| |||||||||||||  ||||||||||  ||||||||    
T  31061173 tcacttgttgcttgaacaataacttgaaatgtcttcttttcacctattttcttgaaattcaaggaa 31061238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 31143677 - 31143818
Alignment:
Q  111 agtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttgcacaataact 210  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||||| |||||    
T  31143677 agtaatgggactccttacaatgtgttttccatttgaccattgcagttctccaaattcgtattttccctgtggagtcacacttgttgcttgcacagtaact 31143776  T
Q  211 tgaaatttcttcttttcaccatttttcttgaatgtcaaggaa 252  Q
    | |||| |||||||||||||  ||||||||||| ||||||||    
T  31143777 ttaaatgtcttcttttcacctattttcttgaatttcaaggaa 31143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 31161503 - 31161644
Alignment:
Q  111 agtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttgcacaataact 210  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||||| |||||    
T  31161503 agtaatgggactccttacaatgtgttttccatttgaccattgcagttctccaaattcgtattttccctgtggagtcacacttgttgcttgcacagtaact 31161602  T
Q  211 tgaaatttcttcttttcaccatttttcttgaatgtcaaggaa 252  Q
    | |||| |||||||||||||  ||||||||||| ||||||||    
T  31161603 ttaaatgtcttcttttcacctattttcttgaatttcaaggaa 31161644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 31243606 - 31243747
Alignment:
Q  111 agtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttgcacaataact 210  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||||| |||||    
T  31243606 agtaatgggactccttacaatgtgttttccatttgaccattgcagttctccaaattcgtattttccctgtggagtcacacttgttgcttgcacagtaact 31243705  T
Q  211 tgaaatttcttcttttcaccatttttcttgaatgtcaaggaa 252  Q
    | |||| |||||||||||||  ||||||||||| ||||||||    
T  31243706 ttaaatgtcttcttttcacctattttcttgaatttcaaggaa 31243747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 31203688 - 31203555
Alignment:
Q  118 ggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccccttggagtcacacttcttgcttgcacaataacttgaaatt 217  Q
    |||||||||||||||||||| |||| |||||||||||  |  || || |||||| | |||| |||||||||| |  ||||||||||||||||||| |||     
T  31203688 ggactccttacaatgtgtttcccatctgtccattgcaaattcccgaactggtatttcccccgtggagtcacattggttgcttgcacaataacttggaatg 31203589  T
Q  218 tcttcttttcaccatttttcttgaatgtcaagga 251  Q
    |||||||||||||| |||||||||| ||||||||    
T  31203588 tcttcttttcaccagttttcttgaaagtcaagga 31203555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 31161346 - 31161410
Alignment:
Q  11 acaacaacaaaatcgatgaaataacataagcatactagtataatccaataataccacattaaatc 75  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||    
T  31161346 acaacaacgaaatcgatgaaataacaaaagcatactagtataaaccaataataacactttaaatc 31161410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 31243449 - 31243513
Alignment:
Q  11 acaacaacaaaatcgatgaaataacataagcatactagtataatccaataataccacattaaatc 75  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||    
T  31243449 acaacaacgaaatcgatgaaataacaaaagcatactagtataaaccaataataacactttaaatc 31243513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 31143522 - 31143586
Alignment:
Q  11 acaacaacaaaatcgatgaaataacataagcatactagtataatccaataataccacattaaatc 75  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||    
T  31143522 acaacaatgaaatcgatgaaataacaaaagcatactagtataaaccaataataacactttaaatc 31143586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 31161412 - 31161495
Alignment:
Q  94 tttcatttgcgttgaacagtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccc 177  Q
    |||||| |||||  ||||||||||||||| |  ||||| ||||| ||||||||||||  |||||||||||||| |||| |||||    
T  31161412 tttcatctgcgtctaacagtaacgggacttcgcacaatatgtttcccatttgtccatcacagttctccaaattcgtattttccc 31161495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 31243515 - 31243598
Alignment:
Q  94 tttcatttgcgttgaacagtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccc 177  Q
    |||||| |||||  ||||||||||||||| |  ||||| ||||| ||||||||||||  |||||||||||||| |||| |||||    
T  31243515 tttcatctgcgtctaacagtaacgggacttcgcacaatatgtttcccatttgtccatcacagttctccaaattcgtattttccc 31243598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 31143588 - 31143669
Alignment:
Q  94 tttcatttgcgttgaacagtaacgggactccttacaatgtgttttccatttgtccattgcagttctccaaattggtatcttccc 177  Q
    |||||| |||||  ||||||||||||||| |  |||||||  || ||||||||||||  |||||||||||||| |||| |||||    
T  31143588 tttcatctgcgtctaacagtaacgggacttcacacaatgt--ttcccatttgtccatcacagttctccaaattcgtattttccc 31143669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University