View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_high_36 (Length: 261)

Name: NF2552_high_36
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_high_36
NF2552_high_36
[»] chr2 (4 HSPs)
chr2 (1-248)||(41571096-41571343)
chr2 (1-248)||(41590044-41590291)
chr2 (1-248)||(41557384-41557631)
chr2 (1-248)||(41583513-41583760)
[»] chr4 (1 HSPs)
chr4 (93-187)||(23916437-23916531)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41571343 - 41571096
Alignment:
Q  1 tcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatcaagtagattctcaaatttaaaataacaattcacagcaacaaactcattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41571343 tcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatcaagtagattctcaaatttaaaataacaattcacagcaacaaactcattttt 41571244  T
Q  101 ccttatcttaaaatcctcaactttgatactttcccaattttttgcaataccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagccta 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41571243 ccttatcttaaaatcctcaactttgatactttcccaatttttcgcaataccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagccta 41571144  T
Q  201 agacctgttccattcactctctccgacaaatttggaagatctatccct 248  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  41571143 agacctgttccattcactctctccaacaaatttggaagatctatccct 41571096  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41590291 - 41590044
Alignment:
Q  1 tcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatcaagtagattctcaaatttaaaataacaattcacagcaacaaactcattttt 100  Q
    |||||||||||||||||||||| |||||||||| | |||| ||||||||| ||||||||||||| |||||   |||| |||| |||||||||||||||||    
T  41590291 tcaaatccaaaacagcacccctcggattctccgaaacaactgtctcatcaggtagattctcaaacttaaacacacaagtcactgcaacaaactcattttt 41590192  T
Q  101 ccttatcttaaaatcctcaactttgatactttcccaattttttgcaataccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagccta 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |||||||  || |||||||    
T  41590191 ccttatcttaaaatcctgaactttgatactttcccaattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgaaagccta 41590092  T
Q  201 agacctgttccattcactctctccgacaaatttggaagatctatccct 248  Q
    ||||||||| |||||||||||||| |  ||||||||||||||||||||    
T  41590091 agacctgtttcattcactctctccaatgaatttggaagatctatccct 41590044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41557631 - 41557384
Alignment:
Q  1 tcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatcaagtagattctcaaatttaaaataacaattcacagcaacaaactcattttt 100  Q
    |||||||||||||||||||| | |||||||||| | | || |||||||| |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  41557631 tcaaatccaaaacagcacccttcggattctccgaaactactgtctcatccagtagattctcaaacttaaacaaacaattcacagcaacaaactcgttttt 41557532  T
Q  101 ccttatcttaaaatcctcaactttgatactttcccaattttttgcaataccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagccta 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |||||||  ||||||||||    
T  41557531 ccttatgttaaaatcttcaactttgatactttcccaattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagccta 41557432  T
Q  201 agacctgttccattcactctctccgacaaatttggaagatctatccct 248  Q
    ||||| ||| | |||||||||||| |  ||||||||||||||||||||    
T  41557431 agaccagtttctttcactctctccaatgaatttggaagatctatccct 41557384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41583760 - 41583513
Alignment:
Q  1 tcaaatccaaaacagcaccccttggattctccggagcaaccgtctcatcaagtagattctcaaatttaaaataacaattcacagcaacaaactcattttt 100  Q
    |||||||||||||| ||||| | |||||||||| | | || |||||||| |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  41583760 tcaaatccaaaacatcacccttcggattctccgaaactactgtctcatccagtagattctcaaacttaaacaaacaattcacagcaacaaactcgttttt 41583661  T
Q  101 ccttatcttaaaatcctcaactttgatactttcccaattttttgcaataccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagccta 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |||||||  ||||||||||    
T  41583660 ccttatcttaaaatcttcaactttgatactttcccaattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagccta 41583561  T
Q  201 agacctgttccattcactctctccgacaaatttggaagatctatccct 248  Q
    ||||| ||| | |||||||||||| |  ||||||||||||||||||||    
T  41583560 agaccagtttctttcactctctccaatgaatttggaagatctatccct 41583513  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 23916437 - 23916531
Alignment:
Q  93 tcatttttccttatcttaaaatcctcaactttgatactttcccaattttttgcaataccattgaactcaaaaggaacaccgaaacgttcgcaata 187  Q
    ||||||||| ||||||| || ||||||||||||||  ||||||| || | ||||||| ||||||||||||| ||||||   |||||||| |||||    
T  23916437 tcatttttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaata 23916531  T

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