View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_high_37 (Length: 250)

Name: NF2552_high_37
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_high_37
NF2552_high_37
[»] chr8 (1 HSPs)
chr8 (1-242)||(15348585-15348826)
[»] chr4 (10 HSPs)
chr4 (10-205)||(48870302-48870497)
chr4 (10-205)||(48885988-48886183)
chr4 (25-205)||(48875606-48875786)
chr4 (9-111)||(50250909-50251011)
chr4 (1-98)||(48891279-48891376)
chr4 (74-161)||(45366402-45366489)
chr4 (36-171)||(45372215-45372350)
chr4 (9-98)||(48852530-48852619)
chr4 (25-108)||(37827129-37827212)
chr4 (25-101)||(48902802-48902878)
[»] chr5 (2 HSPs)
chr5 (25-102)||(29696075-29696152)
chr5 (23-101)||(29687975-29688053)
[»] chr3 (2 HSPs)
chr3 (11-111)||(47452028-47452128)
chr3 (39-111)||(11015668-11015740)
[»] chr6 (1 HSPs)
chr6 (4-99)||(21015672-21015767)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15348826 - 15348585
Alignment:
Q  1 caataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15348826 caataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacc 15348727  T
Q  101 ttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaa 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  15348726 tttaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaataatcatcaagcgatgctgctaaatctatagaa 15348627  T
Q  201 tgaggtagatgacctatgcacaaaattctacgagtctgtgtt 242  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  15348626 tgaggtagatgacctatgcacaaaattctacgagtgtgtgtt 15348585  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 48870497 - 48870302
Alignment:
Q  10 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttc 109  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||| ||| |  | | | ||| | || |||||||||||||||||||| ||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48870398  T
Q  110 aaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg 205  Q
    ||||||| ||| |  ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||    
T  48870397 aaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgagg 48870302  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 48886183 - 48885988
Alignment:
Q  10 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttc 109  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||| ||| |  | | | ||| | || |||||||||||||||||||| ||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttc 48886084  T
Q  110 aaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg 205  Q
    ||||||| ||| |  ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||    
T  48886083 aaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgagg 48885988  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 48875786 - 48875606
Alignment:
Q  25 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgatt 124  Q
    |||||||||||||||||||||||||||| |||||| ||||| || | | ||| |||| ||||||||| || ||||||| ||||||||||||| | | |      
T  48875786 tgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaaaatcatagttagg 48875687  T
Q  125 ttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg 205  Q
    ||  ||| | |||||||||| |||||  | || |||| ||| ||||| | ||||||||| | | ||||||||||| |||||    
T  48875686 ttcaggaagaagaaaatcaagattgaccgcagaagaaatagtatcataaccaagcgatgcttccaaatctatagactgagg 48875606  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 50250909 - 50251011
Alignment:
Q  9 gacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt 108  Q
    |||||||||| || | ||||||  |||||||||||||||||||| |||||| ||||| || |||  |||| || ||| |||||||||||||||| |||||    
T  50250909 gacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaattt 50251008  T
Q  109 caa 111  Q
    |||    
T  50251009 caa 50251011  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 48891376 - 48891279
Alignment:
Q  1 caataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaa 98  Q
    ||||||| |||||||||| || | |||||| ||| |||||||||||||||| ||||| |||||| | |   | |||||||||||| ||||||||||||    
T  48891376 caataggagacaaaggtatttgtttgtgaagtccagtggatggattccatacatagatgtttgagttagtatgcaaaagtacaaaccctctacatgaa 48891279  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 45366402 - 45366489
Alignment:
Q  74 caaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaa 161  Q
    |||||||| |||||||||||||||||||| ||||| || |||||||| |  ||  ||| | ||||||| || ||||||||||||||||    
T  45366402 caaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcagaa 45366489  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 45372215 - 45372350
Alignment:
Q  36 gtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgta 135  Q
    |||||||||||||||||||||| | |||||| |   | ||||| || ||| |||||||||||||||| |||||||| |||| |||||  ||| ||||  |    
T  45372215 gtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaacctttaatttcaagatcaaaatgagattggggatcca 45372314  T
Q  136 gaaaatcaacattgagtgaagcagaagtagaatcat 171  Q
     ||||  ||  || ||||||||||||| ||||||||    
T  45372315 caaaactaaggtttagtgaagcagaagcagaatcat 45372350  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 48852619 - 48852530
Alignment:
Q  9 gacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaa 98  Q
    |||||||||| || | |||||| |||||||||||||||||||||||| |  | |||| ||  || ||||| || ||||||||||||||||    
T  48852619 gacaaaggtatttgtttgtgaactccggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaa 48852530  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 37827129 - 37827212
Alignment:
Q  25 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaattt 108  Q
    |||||||||| ||||||||||||||||  |||| |||| || ||  || ||||| |||||| ||||||| |||||||| |||||    
T  37827129 tgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaattt 37827212  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 48902878 - 48902802
Alignment:
Q  25 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct 101  Q
    |||||||||| ||||| |||||||||| ||||| | |  || || ||| |||||||||||| ||||| |||||||||    
T  48902878 tgtgaaatccagtggaaggattccataaatagatggtgaaagaacagtgcaaaagtacaaaccctctgcatgaacct 48902802  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 29696152 - 29696075
Alignment:
Q  25 tgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacctt 102  Q
    ||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||||| |||||||||||| |||||||    
T  29696152 tgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctt 29696075  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 29688053 - 29687975
Alignment:
Q  23 tctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaacct 101  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||  |    |||||| ||| |||||||||||||||    
T  29688053 tctgtgaactccggtggatggattccatagataaaggcttgaataaccggagcaaagtataaaacctctacatgaacct 29687975  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 47452028 - 47452128
Alignment:
Q  11 caaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttca 110  Q
    |||||||| || | |||||| ||| ||||||||||||||||  |||| ||||||| || |  | ||||||| ||| |||||||||||||||| |||||||    
T  47452028 caaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttca 47452127  T
Q  111 a 111  Q
    |    
T  47452128 a 47452128  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 11015668 - 11015740
Alignment:
Q  39 gatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaa 111  Q
    |||||||||||||| |||| ||||||| || |  |||||| || ||| ||||||||||||| || ||||||||    
T  11015668 gatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaa 11015740  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 21015767 - 21015672
Alignment:
Q  4 taggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggtttgaataatagttcaaaagtacaaagcctctacatgaac 99  Q
    |||| |||||||||| || | |||||| ||  ||||||||||||||||| |||| |||||||| || || ||||| || ||| |||||||||||||    
T  21015767 taggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

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