View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_high_42 (Length: 244)
Name: NF2552_high_42
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_high_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 47456095 - 47455853
Alignment:
| Q |
1 |
gcttctcctcttcttattttcttccattgtgatacacgataccgaaatatatattgcttatagtaattgctattattttccttgcttgtgtttaaatact |
100 |
Q |
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| T |
47456095 |
gcttctcctcttcttattttcttccattgtgatacacgatacagaaatatatattgcttatagtaattgctattattttccttgcttgtgtt-aaatact |
47455997 |
T |
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| Q |
101 |
tgggtttgaaatatcatcactgttgagcttccaaaacaccatatctttagactccctttatcaggagcattcaaatttagcatggagttgatgatatata |
200 |
Q |
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| T |
47455996 |
tgagtttgaaataccatcactgttgagcttccaaaacaccatatctttagactccctttatcaggagcattcaaatttagcatggagttgatgatatata |
47455897 |
T |
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| Q |
201 |
ttagaggcaaaacattacgaaaaatttgcaaattctaaactcgc |
244 |
Q |
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| T |
47455896 |
ttagaggcaaaacatcacgaaaaatttgcaaattctaaactcgc |
47455853 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15128292 - 15128364
Alignment:
| Q |
1 |
gcttctcctcttcttattttcttccattgtgatacacgataccgaaatatatattgcttatagtaattgctat |
73 |
Q |
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|||||| ||||| ||||||||||| || ||||||| ||||| |||||| |||||||| |||| ||||||||| |
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| T |
15128292 |
gcttctgctcttgttattttcttctcttttgatacatgatacggaaatacatattgctgatagcaattgctat |
15128364 |
T |
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