View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_high_8 (Length: 485)
Name: NF2552_high_8
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 53107016 - 53107463
Alignment:
| Q |
20 |
attacaaaatgaatacacacacacaagatcaacatttttacaagatgctttgtattcaagacttgaacttctaacaacactgttacagtagtatgtgtat |
119 |
Q |
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| T |
53107016 |
attacaaaatgaatacacacacacaagatcaacatttttacaagatgctttgtattcaagacttgaacttctaacaacactgttatagtagtatgtgtat |
53107115 |
T |
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| Q |
120 |
agaatatacattcatctgtatgatttaactgttagtttattaaaactaattaacnnnnnnnataattaacttaaaagtcatacaaaacggtgatgtgtaa |
219 |
Q |
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| T |
53107116 |
agaatatacattcatctatatgatttaactgttagtttattaaaactaattaactttttttataattaacttaaaagtcatacaaaacggtgatgtgtaa |
53107215 |
T |
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| Q |
220 |
ttggttgatagtgtgaaacattctctcatttttaaaatcnnnnnnngacaataatattctctcaattttaaaatcttatgtagaatgaaattcatgtatg |
319 |
Q |
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| T |
53107216 |
ttggttgatagtgtgaaacattctctcatttttaaaatctttttttgacaataatattctctcaattttaaaatcttatgtagaatgaaattcatgtatg |
53107315 |
T |
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| Q |
320 |
aaaagaaataaaaattgaggaatgacctcgtgtcaatttcaaaagaacaaacatacttataatcatttatttatttacaaagaatgaccagttttggtca |
419 |
Q |
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| T |
53107316 |
aaaagaaataaaaattgaggaatgacctcgtgtcaatttcaaaagaacaaacatacttataatcatttatttatttacaaagaatgaccagttttggtca |
53107415 |
T |
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| Q |
420 |
agaaagaatattgaccagtaatttgtttagaaaacagaatgcactaag |
467 |
Q |
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| T |
53107416 |
agaaagaatattgaccagtaatttgtttagaaaacagaatgcactaag |
53107463 |
T |
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