View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_10 (Length: 463)
Name: NF2552_low_10
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 445
Target Start/End: Original strand, 9998742 - 9999181
Alignment:
| Q |
6 |
cattttggcagttgagctaggacttttagatnnnnnnnntatatatattctaaggattaaaaataaaaattggttggtatattttgtagggagaaaaata |
105 |
Q |
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| T |
9998742 |
cattttgccagttgaactaggacttctagataaaaaatatatatatattctaaggattaaaaataaaaattggttggtatattttgtagggagaaaaata |
9998841 |
T |
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| Q |
106 |
tagttgagtatttctaaatttaactctgagaaatgacgtggtagccaacgagaattttcagttaaacccaaatcaacaaaactccatcccgtcgcgccgc |
205 |
Q |
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| T |
9998842 |
tagttgagtatttctaaatttaactctgagaaatgacgtggtagccaacgagaattttcagttaaacccaaatcaacaaaactccatcccgtcgcgccgc |
9998941 |
T |
|
| Q |
206 |
gtcggagaacctaatcatccctcagccacacctggacggttgcaaccgcgtcacagccaccaccggaaaatcccaacgtaagcaaggataggtattgaaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998942 |
gtcggagaacctaatcatccctcagccacacctggacagttgcaaccgcgtcacagccaccaccggaaaatcccaacgtaagcaaggataggtattgaaa |
9999041 |
T |
|
| Q |
306 |
caagcttaaactaatctcattattattattcacttacaccattatagtgcacaagctgtttgatagaatgcttgaattgttgcatttcggaaaggggaaa |
405 |
Q |
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| T |
9999042 |
caagcttaaactaatctcattattattattcacttacaccattatagtgcacaagctgtttgatagaatgcttgaattgttgcatttcggaaaggggaaa |
9999141 |
T |
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| Q |
406 |
aaatgtggtggtttggtgtgaatttctagaacatgttttc |
445 |
Q |
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| T |
9999142 |
aaatgtggtggtttggtgtgaatttctagaacatgttttc |
9999181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 9470614 - 9470723
Alignment:
| Q |
174 |
caaatcaacaaaactccatcccgtcgc-gccgcgtcggagaacctaatcatccctcagccacacctggacggttgcaaccgcgtcacagccaccaccgga |
272 |
Q |
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||||||||||||||| ||||| ||| | |||||||||||||||| ||||| | ||||||||||||| ||||||||||||| ||||||||||| |||| | |
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| T |
9470614 |
caaatcaacaaaacttcatcctgtcactgccgcgtcggagaacccaatcagctctcagccacaccttcacggttgcaaccgggtcacagccacaaccgaa |
9470713 |
T |
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| Q |
273 |
aaatcccaac |
282 |
Q |
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||||| |||| |
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| T |
9470714 |
aaatctcaac |
9470723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 41602598 - 41602489
Alignment:
| Q |
174 |
caaatcaacaaaactccatcccgtcgc-gccgcgtcggagaacctaatcatccctcagccacacctggacggttgcaaccgcgtcacagccaccaccgga |
272 |
Q |
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||||||||||||||| ||||| ||| | |||||||||||||||| ||||| | ||||| ||||||| ||||||||||||| ||||||||||| | || | |
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| T |
41602598 |
caaatcaacaaaacttcatcctgtcaccgccgcgtcggagaacccaatcagctctcagacacaccttcacggttgcaaccgggtcacagccacaaacgaa |
41602499 |
T |
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| Q |
273 |
aaatcccaac |
282 |
Q |
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||||| |||| |
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| T |
41602498 |
aaatctcaac |
41602489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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