View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_low_11 (Length: 459)

Name: NF2552_low_11
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_low_11
NF2552_low_11
[»] chr4 (7 HSPs)
chr4 (13-445)||(53106580-53107017)
chr4 (359-396)||(19879774-19879811)
chr4 (361-396)||(39158108-39158143)
chr4 (361-399)||(13139151-13139189)
chr4 (362-396)||(54921695-54921729)
chr4 (361-398)||(20381354-20381391)
chr4 (359-396)||(40308442-40308479)
[»] chr6 (1 HSPs)
chr6 (359-396)||(31713344-31713381)
[»] chr3 (4 HSPs)
chr3 (361-397)||(35755987-35756023)
chr3 (361-398)||(1668183-1668220)
chr3 (359-396)||(29222433-29222470)
chr3 (361-397)||(40419674-40419710)
[»] chr2 (4 HSPs)
chr2 (360-396)||(32869828-32869864)
chr2 (361-399)||(44530712-44530750)
chr2 (359-396)||(45693501-45693538)
chr2 (361-397)||(41212949-41212985)
[»] chr7 (3 HSPs)
chr7 (361-396)||(38662813-38662848)
chr7 (361-399)||(31487193-31487231)
chr7 (359-396)||(27421922-27421959)
[»] chr5 (2 HSPs)
chr5 (361-396)||(32912041-32912076)
chr5 (362-396)||(33901929-33901963)
[»] chr1 (4 HSPs)
chr1 (361-396)||(32926262-32926297)
chr1 (362-399)||(50142276-50142313)
chr1 (361-397)||(39757183-39757219)
chr1 (361-397)||(39762537-39762573)
[»] chr8 (3 HSPs)
chr8 (359-397)||(28732763-28732801)
chr8 (359-392)||(9629562-9629595)
chr8 (361-397)||(20852922-20852958)
[»] scaffold0085 (1 HSPs)
scaffold0085 (359-399)||(22884-22924)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 53107017 - 53106580
Alignment:
Q  13 attttgttcttcatccaatagagattactagatggccaatactttttgagtcaatagctttaagagcaagttgactgaatcagttgcacgatgtgaaaac 112  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  53107017 atttttttcttcatccaatagagattactagatggccaatattttttgagtcaataactttaagagcaagttgactgaataagttgcacgatgtgaaaac 53106918  T
Q  113 tctcaatactaaggtaaggaatggttgaatcattgaatg----ggaacagtaacaaagataattacgcatactattgtccttggtctagtcagcggtctc 208  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53106917 tctcaatactaaggtaaggaatggttgaatcattgaatgaatgggaacagtaacaaagataattacgcatactattgtccttggtctagtcagcggtatc 53106818  T
Q  209 ctgtttattgtagtcaaataatgaaaaattgtgatttgtggttccatgctaacaattcgtatcaaaaataggcaaatcgattctcaaaattacaagtctt 308  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  53106817 ctatttatcgtagtcaaataatgaaaaattgtgatttgtggttccatgctaacaattcgtataaaaaataagcaaatcgattctcaaaattacaagtctt 53106718  T
Q  309 agttaaatcagtttctaactattgtgttggtcaacatggttcatcaaatcaaaaatgatatttgaacaatcattttatgataatttttatggtgatta-n 407  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||      
T  53106717 agttaaatcagtttctaactattgtgttggtcaacatggtttatcaaatcaaaaatgatacttgaacaattattttatgataatttttatgatgactatt 53106618  T
Q  408 nnnnnnncatacttaaattgtgtttttacttttctccc 445  Q
           |||||||||||||||||||||||||||||||    
T  53106617 tttttttcatacttaaattgtgtttttacttttctccc 53106580  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 19879774 - 19879811
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19879774 aaaaatgatatttgtacaatcattttatgataattttt 19879811  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 39158108 - 39158143
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||||||||||||| |||||||||||    
T  39158108 aaatgatatttgaacaatcattttttgataattttt 39158143  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 13139151 - 13139189
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataatttttatg 399  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  13139151 aaatgatatttgaacatccattttatgataatttttatg 13139189  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 54921729 - 54921695
Alignment:
Q  362 aatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||||||||||| ||||||||||||    
T  54921729 aatgatatttgaacaatcatttgatgataattttt 54921695  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 20381354 - 20381391
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataatttttat 398  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  20381354 aaattatatttgaacaatcattttttgataatttttat 20381391  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 40308442 - 40308479
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  40308442 aaaaatgatatttgtacaatcattttataataattttt 40308479  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 31713381 - 31713344
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31713381 aaaaatgatattcgaacaatcattttatgataattttt 31713344  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 35755987 - 35756023
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttta 397  Q
    ||||||||||||||||| |||||||||||||||||||    
T  35755987 aaatgatatttgaacaaccattttatgataattttta 35756023  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 1668220 - 1668183
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataatttttat 398  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  1668220 aaatgatatttgaacaaccattttataataatttttat 1668183  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 29222470 - 29222433
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||  |||||||||||||||||||||||    
T  29222470 aaaaatgatatttatacaatcattttatgataattttt 29222433  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 40419710 - 40419674
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttta 397  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  40419710 aaatgatatttgtacaatcattttgtgataattttta 40419674  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 32869828 - 32869864
Alignment:
Q  360 aaaatgatatttgaacaatcattttatgataattttt 396  Q
    ||||||||||||||||| |||||||||||||||||||    
T  32869828 aaaatgatatttgaacattcattttatgataattttt 32869864  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 44530750 - 44530712
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataatttttatg 399  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  44530750 aaatgatatttgaacaattattttatgataacttttatg 44530712  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 45693538 - 45693501
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  45693538 aaaaatgatatttgtacaattattttatgataattttt 45693501  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41212949 - 41212985
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttta 397  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  41212949 aaatgatatttgtacaatcattttattataattttta 41212985  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 38662848 - 38662813
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttt 396  Q
    ||||||||||||||||||||||||| ||||||||||    
T  38662848 aaatgatatttgaacaatcattttaggataattttt 38662813  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 31487193 - 31487231
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataatttttatg 399  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  31487193 aaatgatatttcaacaattattttatgataatttttatg 31487231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 27421959 - 27421922
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttt 396  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  27421959 aaaaatgatatttcaacaatcattttatgataaatttt 27421922  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 32912041 - 32912076
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||||| |||||||||||||||||||    
T  32912041 aaatgatatttgaacattcattttatgataattttt 32912076  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 33901963 - 33901929
Alignment:
Q  362 aatgatatttgaacaatcattttatgataattttt 396  Q
    |||||||||||||||| ||||||||||||||||||    
T  33901963 aatgatatttgaacaaccattttatgataattttt 33901929  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 32926262 - 32926297
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttt 396  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32926262 aaatgatatttgaacaatcattttatgataactttt 32926297  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 50142313 - 50142276
Alignment:
Q  362 aatgatatttgaacaatcattttatgataatttttatg 399  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  50142313 aatgatatttgaacaatcatttgatgacaatttttatg 50142276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 39757183 - 39757219
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttta 397  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39757183 aaatgatatttgaacaactattttatgataattttta 39757219  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 39762537 - 39762573
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttta 397  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39762537 aaatgatatttgaacaactattttatgataattttta 39762573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 28732763 - 28732801
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataattttta 397  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  28732763 aaaaatgatatttatacaatcattttatgataattttta 28732801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 9629562 - 9629595
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataat 392  Q
    |||||||||||||||||||||||||| |||||||    
T  9629562 aaaaatgatatttgaacaatcattttttgataat 9629595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 20852922 - 20852958
Alignment:
Q  361 aaatgatatttgaacaatcattttatgataattttta 397  Q
    |||||||||||| |||| |||||||||||||||||||    
T  20852922 aaatgatatttgtacaaccattttatgataattttta 20852958  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 22924 - 22884
Alignment:
Q  359 aaaaatgatatttgaacaatcattttatgataatttttatg 399  Q
    |||||||||||||||||||||||||| ||| || |||||||    
T  22924 aaaaatgatatttgaacaatcattttgtgacaacttttatg 22884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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