View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_13 (Length: 452)
Name: NF2552_low_13
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 452
Target Start/End: Original strand, 41697112 - 41697560
Alignment:
| Q |
9 |
gaagaatatggctaggtatctgtcagtaattatatgcagtgttaattcaatatatgaacgagggtgcgagcgtgtgtgtgtg----ggataaaacaagac |
104 |
Q |
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| T |
41697112 |
gaagaaaatggctaggtatctgtcagtaattatatgcagtgttaattcaatatatgaacgagggtgcgtgtgtgtgtgtgtgtgggggataaaacaagac |
41697211 |
T |
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| Q |
105 |
ttgtattttctgaaaaacttacctgattaatatgtaggtgacgatacatgtttgcatggaagaaaggtgtttctccaacctcgtgaattgaaattcgctt |
204 |
Q |
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| T |
41697212 |
ttgtattttctgaaaaacttacctgattaatatgtaggtgacggtacatgtttgcatggaagaaaggcgtttctccaacctcgtgaattgaaattcgctt |
41697311 |
T |
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| Q |
205 |
tttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatttctgatgaacgaatcctctgtcaa |
304 |
Q |
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| T |
41697312 |
tttggatgcagtttcaacattaacaatcctacgagtacttatttcaattaggttataagaatgccccactgaaatttctgatgaacgaatcctctgttaa |
41697411 |
T |
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| Q |
305 |
aacaagagcataacatattataaacattaaattcataagagttcattaaaattt-aaaaaatgcaaaggctctaaaatcaaacatttatagcatcgtcaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697412 |
aacaagagcataacatattataaacattaaattcataagagttcattaaaatttaaaaaaatgcaaaggctctaaaatcaaacatttatagcatcgtcaa |
41697511 |
T |
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| Q |
404 |
tgccagtggcttcaagaatgcctcgcgaaatgaagttgcgcccaatccc |
452 |
Q |
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| T |
41697512 |
tgccagtggcttcaagaatgcctcgcgaaatgaagttgcgcccaatccc |
41697560 |
T |
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