View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2552_low_16 (Length: 431)
Name: NF2552_low_16
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 38048721 - 38049141
Alignment:
| Q |
11 |
cataggtggcattgcaagttgcaataaagctattacaagatagatgatccataagctatgtgaccgagtaaagggccaaacaattgactagaagaaaact |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38048721 |
cataggtggcattgcaagttgcaacaaagctattacaagatagaagatccataagctatgtgaccgagtaaagggccaaacaattgactagaagaaaact |
38048820 |
T |
|
| Q |
111 |
gttaaagcaattgtaagttgtaagtgtgctatactgatattcccatggaaggacgttttcttccttgaggttcttcaaccaataaaatcatcgaattttc |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38048821 |
gttaaagcacttgtaagttgtaagtgtgctatactgatattcccatggaaggacgttttcttccttgaggttcttcaacaaataaaatcatcgaattttc |
38048920 |
T |
|
| Q |
211 |
tttactggaattcctatcaacctagttgtttctctggtccgtggtcccaaacagatacaaataccaaaccaaaacaagttgatcaacttccatcactctt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38048921 |
attactggaattcctatcaacctagttgtttctctggtccgtggtcccaaacagatacaaataccaaaccaaaacaagttgatcaacttccatcactctt |
38049020 |
T |
|
| Q |
311 |
gtttgcatactaaatcaactaaaacatctcaatatcacacacattgccaatattgttacttaaaggcagaaattgtaatagagtagatgcaactaggtaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38049021 |
gtttgcatactaaatcaactaaaacatctcaatatcacacacattgccaatattgttacttaaaggcagaaattgtaatagagtagatgcaactaggtaa |
38049120 |
T |
|
| Q |
411 |
ataaataccataaccaactac |
431 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38049121 |
ataaataccataaccaactac |
38049141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University