View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_17 (Length: 410)
Name: NF2552_low_17
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 5332335 - 5332716
Alignment:
| Q |
13 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactannnnnnnnnnnnnn |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332335 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5332434 |
T |
|
| Q |
113 |
nnnactaatgaactatcgtagcttcaacatgcaatatcaatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtggccccggannnnn |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5332435 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt |
5332534 |
T |
|
| Q |
213 |
nnngaagtttcaaagtgttgtcaaaaacacattgacataaactcagagtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttcc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332535 |
tttgaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttcc |
5332634 |
T |
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| Q |
313 |
atggtaaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaac |
394 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332635 |
atagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaac |
5332716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 5350054 - 5350435
Alignment:
| Q |
13 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactannnnnnnnnnnnnn |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350054 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5350153 |
T |
|
| Q |
113 |
nnnactaatgaactatcgtagcttcaacatgcaatatcaatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtggccccggannnnn |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5350154 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccggattttt |
5350253 |
T |
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| Q |
213 |
nnngaagtttcaaagtgttgtcaaaaacacattgacataaactcagagtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttcc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350254 |
tttgaagtttcaaagtgttgtcaaaaacacattgacataaactcagtgtcaatctaaacatacactaagtctctaagaaagctttaggaccacaatttcc |
5350353 |
T |
|
| Q |
313 |
atggtaaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaac |
394 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350354 |
atagtgaccatgatttctttaatatcactaggttaacacagccgttgtatgcacaaaacaatttaaaaccatggcacaaaac |
5350435 |
T |
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