View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_low_19 (Length: 408)

Name: NF2552_low_19
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_low_19
NF2552_low_19
[»] chr4 (14 HSPs)
chr4 (19-215)||(54060075-54060271)
chr4 (314-377)||(54060369-54060432)
chr4 (376-408)||(10385077-10385109)
chr4 (370-408)||(5744077-5744115)
chr4 (375-405)||(40071448-40071478)
chr4 (376-405)||(17494024-17494053)
chr4 (375-408)||(28152220-28152253)
chr4 (376-408)||(3442344-3442376)
chr4 (376-408)||(5735500-5735532)
chr4 (376-408)||(7738819-7738851)
chr4 (369-405)||(34408650-34408686)
chr4 (376-408)||(45198340-45198372)
chr4 (374-402)||(46608449-46608477)
chr4 (376-408)||(47579515-47579547)
[»] chr7 (11 HSPs)
chr7 (317-367)||(41320916-41320966)
chr7 (375-408)||(31466357-31466390)
chr7 (375-408)||(36819925-36819958)
chr7 (371-408)||(47081209-47081246)
chr7 (324-364)||(3730630-3730670)
chr7 (376-408)||(31466587-31466619)
chr7 (376-408)||(37950945-37950977)
chr7 (344-372)||(44133937-44133965)
chr7 (314-366)||(44481488-44481540)
chr7 (376-408)||(47713731-47713763)
chr7 (376-408)||(47713808-47713840)
[»] chr6 (7 HSPs)
chr6 (375-408)||(2913126-2913159)
chr6 (373-408)||(20662056-20662091)
chr6 (371-405)||(16436046-16436080)
chr6 (374-402)||(2398005-2398033)
chr6 (376-408)||(18991904-18991936)
chr6 (376-408)||(29979024-29979056)
chr6 (376-408)||(33121542-33121574)
[»] chr8 (12 HSPs)
chr8 (376-408)||(29708790-29708822)
chr8 (325-372)||(33508061-33508108)
chr8 (375-408)||(23249081-23249114)
chr8 (314-367)||(23762962-23763015)
chr8 (374-402)||(761785-761813)
chr8 (376-408)||(2805476-2805508)
chr8 (373-405)||(18575025-18575057)
chr8 (371-403)||(29708555-29708587)
chr8 (376-408)||(30290153-30290185)
chr8 (373-401)||(38842399-38842427)
chr8 (376-408)||(40013651-40013683)
chr8 (376-408)||(45082041-45082073)
[»] chr3 (15 HSPs)
chr3 (372-408)||(38878272-38878308)
chr3 (375-408)||(8559004-8559037)
chr3 (325-366)||(28725605-28725646)
chr3 (376-405)||(40497044-40497073)
chr3 (376-405)||(48169995-48170024)
chr3 (376-405)||(50676744-50676773)
chr3 (376-408)||(7459820-7459852)
chr3 (376-408)||(18659281-18659313)
chr3 (376-408)||(34827322-34827354)
chr3 (376-408)||(34827482-34827514)
chr3 (376-408)||(37833129-37833161)
chr3 (318-366)||(38309815-38309863)
chr3 (376-408)||(38492052-38492084)
chr3 (314-366)||(45404906-45404958)
chr3 (376-408)||(48927600-48927632)
[»] chr5 (9 HSPs)
chr5 (373-404)||(13548210-13548241)
chr5 (376-408)||(5213151-5213183)
chr5 (314-366)||(5344635-5344687)
chr5 (324-372)||(18907632-18907680)
chr5 (376-408)||(30351874-30351906)
chr5 (376-408)||(35447997-35448029)
chr5 (376-408)||(37304374-37304406)
chr5 (376-408)||(40512909-40512941)
chr5 (376-408)||(42148536-42148568)
[»] chr2 (11 HSPs)
chr2 (371-405)||(2110215-2110249)
chr2 (370-408)||(27559804-27559842)
chr2 (375-408)||(20917728-20917761)
chr2 (376-405)||(43370945-43370974)
chr2 (376-408)||(1748974-1749006)
chr2 (376-408)||(7443120-7443152)
chr2 (376-408)||(14707535-14707567)
chr2 (376-408)||(18718468-18718500)
chr2 (376-408)||(23671605-23671637)
chr2 (376-408)||(40425249-40425281)
chr2 (376-408)||(42038523-42038555)
[»] scaffold0459 (1 HSPs)
scaffold0459 (375-408)||(12751-12784)
[»] scaffold0366 (2 HSPs)
scaffold0366 (375-408)||(10392-10425)
scaffold0366 (375-408)||(14058-14091)
[»] scaffold0042 (1 HSPs)
scaffold0042 (325-366)||(30651-30692)
[»] chr1 (8 HSPs)
chr1 (375-408)||(30529049-30529082)
chr1 (376-405)||(46862827-46862856)
chr1 (376-405)||(50777268-50777297)
chr1 (375-408)||(50876593-50876626)
chr1 (376-408)||(25532007-25532039)
chr1 (376-408)||(36035915-36035947)
chr1 (376-408)||(39354264-39354296)
chr1 (376-408)||(48264811-48264843)
[»] scaffold0137 (1 HSPs)
scaffold0137 (314-366)||(21576-21628)
[»] scaffold0007 (1 HSPs)
scaffold0007 (376-408)||(15216-15248)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 54060075 - 54060271
Alignment:
Q  19 ccattataactatttgttatacattagacacgttatccatttgaaatagttttagnnnnnnnnnnnnnnnnnntttaatcaaaatacccttggtgtttat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  54060075 ccattataactatttgttatacattagacacgttatccatttgaaatagttttagaaaacaaaaaaccaaaaatttaatcaaaatacccttggtgtttat 54060174  T
Q  119 gatgtttctcatctaattttaaatttgttgtaatttattatttaccaaaaaattacataacaaatagtatgcgattatttaaaatagatcaaatatg 215  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54060175 gatgttcctcatctaatttaaaagttgttgtaatttattatttaccaaaaaattacataacaaatagtatgcgattatttaaaatagattaaatatg 54060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 54060369 - 54060432
Alignment:
Q  314 ccttactttgaagtcaactcatgtgcagccttcatattttttaataaaattttgtagaatgtta 377  Q
    ||||||||||||||||||||||||  |||||| |||||||||||| || |||||||||||||||    
T  54060369 ccttactttgaagtcaactcatgtatagcctttatattttttaatgaagttttgtagaatgtta 54060432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 10385109 - 10385077
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||||||||||||||    
T  10385109 tactccctccgtcccttaataagtgacctagtt 10385077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 5744077 - 5744115
Alignment:
Q  370 gaatgttactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  5744077 gaatgttactccctccgtcccttaataaatgacccagtt 5744115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 405
Target Start/End: Original strand, 40071448 - 40071478
Alignment:
Q  375 ttactccctccgtcccttaataagtgaccta 405  Q
    |||||||||||||||||||||||||||||||    
T  40071448 ttactccctccgtcccttaataagtgaccta 40071478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 17494053 - 17494024
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  17494053 tactccctccgtcccttaataagtgaccta 17494024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 28152253 - 28152220
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  28152253 ttactccctccgtcccttaataaatgacctagtt 28152220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 3442344 - 3442376
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  3442344 tactccctccgtcccttaataaatgacctagtt 3442376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 5735532 - 5735500
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  5735532 tactccctccgtcccttaataaatgacctagtt 5735500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 7738819 - 7738851
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  7738819 tactccctccgtcccttaataaatgacctagtt 7738851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 34408650 - 34408686
Alignment:
Q  369 agaatgttactccctccgtcccttaataagtgaccta 405  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  34408650 agaatattactccctccgtccctgaataagtgaccta 34408686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 45198340 - 45198372
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  45198340 tactccctccgtcccttaataaatgacctagtt 45198372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 46608477 - 46608449
Alignment:
Q  374 gttactccctccgtcccttaataagtgac 402  Q
    |||||||||||||||||||||||||||||    
T  46608477 gttactccctccgtcccttaataagtgac 46608449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 47579547 - 47579515
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  47579547 tactccctccgtcccttaataaatgacctagtt 47579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 41320966 - 41320916
Alignment:
Q  317 tactttgaagtcaactcatgtgcagccttcatattttttaataaaattttg 367  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||| ||||    
T  41320966 tacttttaagtcaactcatgtgcagccttcatattttataatgaaagtttg 41320916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 31466357 - 31466390
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  31466357 ttactccctccgtcccttaataaatgacctagtt 31466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 36819958 - 36819925
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  36819958 ttactccctccgtcccttaataaatgacctagtt 36819925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 47081246 - 47081209
Alignment:
Q  371 aatgttactccctccgtcccttaataagtgacctagtt 408  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  47081246 aatgctactccctccgtcccttaataaatgacctagtt 47081209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 3730630 - 3730670
Alignment:
Q  324 aagtcaactcatgtgcagccttcatattttttaataaaatt 364  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  3730630 aagtcaactcatgtgcagcctttgtattttttaatgaaatt 3730670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 31466619 - 31466587
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  31466619 tactccctccgtccctaaataagtgacctagtt 31466587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 37950945 - 37950977
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  37950945 tactccctccgtcccttaataaatgacctagtt 37950977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 44133937 - 44133965
Alignment:
Q  344 ttcatattttttaataaaattttgtagaa 372  Q
    |||||||||||||||||||||||||||||    
T  44133937 ttcatattttttaataaaattttgtagaa 44133965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 44481488 - 44481540
Alignment:
Q  314 ccttactttgaagtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    ||||||||| ||||||||| || || ||||||||||||||| ||| |||||||    
T  44481488 ccttacttttaagtcaacttatatgtagccttcatatttttgaatgaaatttt 44481540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 47713763 - 47713731
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  47713763 tactccctccgtccctaaataagtgacctagtt 47713731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 47713840 - 47713808
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  47713840 tactccctccgtccctaaataagtgacctagtt 47713808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 2913159 - 2913126
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||||||||||||||    
T  2913159 ttactccctccgtcccttaataagtgacctagtt 2913126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 408
Target Start/End: Original strand, 20662056 - 20662091
Alignment:
Q  373 tgttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||||| ||||||||||    
T  20662056 tgttactccctccgtcccttaataaatgacctagtt 20662091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 16436080 - 16436046
Alignment:
Q  371 aatgttactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||| |||||||||||||    
T  16436080 aatgttactccctccgtccctgaataagtgaccta 16436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 2398033 - 2398005
Alignment:
Q  374 gttactccctccgtcccttaataagtgac 402  Q
    |||||||||||||||||||||||||||||    
T  2398033 gttactccctccgtcccttaataagtgac 2398005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 18991904 - 18991936
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  18991904 tactccctccgtccctgaataagtgacctagtt 18991936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 29979024 - 29979056
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  29979024 tactccctccgtcccttaataaatgacctagtt 29979056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 33121542 - 33121574
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  33121542 tactccctccgtcccttaataaatgacctagtt 33121574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 29708822 - 29708790
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||||||||||||||    
T  29708822 tactccctccgtcccttaataagtgacctagtt 29708790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 33508061 - 33508108
Alignment:
Q  325 agtcaactcatgtgcagccttcatattttttaataaaattttgtagaa 372  Q
    ||||||||||||| || |||||||||||||||||||| |||| |||||    
T  33508061 agtcaactcatgtccaaccttcatattttttaataaatttttttagaa 33508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 23249114 - 23249081
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  23249114 ttactccctccgtcccttaataaatgacctagtt 23249081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 23763015 - 23762962
Alignment:
Q  314 ccttactttgaagtcaactcatgtgcagccttcatattttttaataaaattttg 367  Q
    ||||||||| |||| ||||||| || || |||||||||| ||||||||||||||    
T  23763015 ccttacttttaagtaaactcatatgtagacttcatatttcttaataaaattttg 23762962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 761813 - 761785
Alignment:
Q  374 gttactccctccgtcccttaataagtgac 402  Q
    |||||||||||||||||||||||||||||    
T  761813 gttactccctccgtcccttaataagtgac 761785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 2805476 - 2805508
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  2805476 tactccctccgtcccttaataaatgacctagtt 2805508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 18575025 - 18575057
Alignment:
Q  373 tgttactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||| |||||||||||||    
T  18575025 tgttactccctccgtccctgaataagtgaccta 18575057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 29708555 - 29708587
Alignment:
Q  371 aatgttactccctccgtcccttaataagtgacc 403  Q
    |||| ||||||||||||||||||||||||||||    
T  29708555 aatgatactccctccgtcccttaataagtgacc 29708587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 30290185 - 30290153
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  30290185 tactccctccgtcccttaataaatgacctagtt 30290153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 401
Target Start/End: Complemental strand, 38842427 - 38842399
Alignment:
Q  373 tgttactccctccgtcccttaataagtga 401  Q
    |||||||||||||||||||||||||||||    
T  38842427 tgttactccctccgtcccttaataagtga 38842399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 40013651 - 40013683
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  40013651 tactccctccgtcccttaataaatgacctagtt 40013683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 45082073 - 45082041
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  45082073 tactccctccgtcccttaataaatgacctagtt 45082041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 38878272 - 38878308
Alignment:
Q  372 atgttactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||| ||||||||||||||||||||||||||||    
T  38878272 atgttacttcctccgtcccttaataagtgacctagtt 38878308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 8559004 - 8559037
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  8559004 ttactccctccgtcccttaataaatgacctagtt 8559037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 28725646 - 28725605
Alignment:
Q  325 agtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    |||||||||||||  | |||||||||||||||||||||||||    
T  28725646 agtcaactcatgtctaaccttcatattttttaataaaatttt 28725605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 40497073 - 40497044
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  40497073 tactccctccgtcccttaataagtgaccta 40497044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 48170024 - 48169995
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  48170024 tactccctccgtcccttaataagtgaccta 48169995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 50676773 - 50676744
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  50676773 tactccctccgtcccttaataagtgaccta 50676744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 7459820 - 7459852
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  7459820 tactccctccgtcccttaataaatgacctagtt 7459852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 18659313 - 18659281
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  18659313 tactccctccgtcccttaataaatgacctagtt 18659281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 34827322 - 34827354
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  34827322 tactccctccgtccctgaataagtgacctagtt 34827354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 34827514 - 34827482
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  34827514 tactccctccgtcccttaataaatgacctagtt 34827482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 37833161 - 37833129
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  37833161 tactccctccgtcccttaataaatgacctagtt 37833129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 38309815 - 38309863
Alignment:
Q  318 actttgaagtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    ||||| |||||||||| |||| |||| |||||||||||||| |||||||    
T  38309815 acttttaagtcaactcttgtgtagccatcatattttttaatgaaatttt 38309863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 38492052 - 38492084
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  38492052 tactccctccgtccctgaataagtgacctagtt 38492084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 45404906 - 45404958
Alignment:
Q  314 ccttactttgaagtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    |||||||||  |||||||||||||  | ||||||||||||||||| |||||||    
T  45404906 ccttacttttcagtcaactcatgtctaaccttcatattttttaatgaaatttt 45404958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 48927600 - 48927632
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||| ||||||||||||||||||||||    
T  48927600 tactccctccatcccttaataagtgacctagtt 48927632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 404
Target Start/End: Original strand, 13548210 - 13548241
Alignment:
Q  373 tgttactccctccgtcccttaataagtgacct 404  Q
    ||||||||||||||||||||||||||||||||    
T  13548210 tgttactccctccgtcccttaataagtgacct 13548241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 5213183 - 5213151
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  5213183 tactccctccgtccctgaataagtgacctagtt 5213151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 5344635 - 5344687
Alignment:
Q  314 ccttactttgaagtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    ||||||||| ||||||||||| ||| | ||||||||||||| ||| |||||||    
T  5344635 ccttacttttaagtcaactcaagtgtaaccttcatatttttgaatgaaatttt 5344687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 18907632 - 18907680
Alignment:
Q  324 aagtcaactcatgtgcagccttcatattttttaataaaattttgtagaa 372  Q
    |||| |||||||||| ||  ||||||||||||||||||||||| |||||    
T  18907632 aagtaaactcatgtgtagaattcatattttttaataaaattttctagaa 18907680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 30351874 - 30351906
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||| ||||||||||||||||||||||||||    
T  30351874 tactccatccgtcccttaataagtgacctagtt 30351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 35447997 - 35448029
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  35447997 tactccctccgtcccttaataaatgacctagtt 35448029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 37304406 - 37304374
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  37304406 tactccctccgtccctgaataagtgacctagtt 37304374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 40512941 - 40512909
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  40512941 tactccctccgtccctaaataagtgacctagtt 40512909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 42148568 - 42148536
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  42148568 tactccctccgtcccttaataaatgacctagtt 42148536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 2110215 - 2110249
Alignment:
Q  371 aatgttactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||| |||||||||||||    
T  2110215 aatgttactccctccgtccctgaataagtgaccta 2110249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 27559842 - 27559804
Alignment:
Q  370 gaatgttactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  27559842 gaatgttactccctccgtcccttaataaatgacccagtt 27559804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 20917728 - 20917761
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  20917728 ttactccctccgtcccttaataaatgacctagtt 20917761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 43370974 - 43370945
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  43370974 tactccctccgtcccttaataagtgaccta 43370945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 1748974 - 1749006
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||| ||||||||||||||||||    
T  1748974 tactccctccgtcctttaataagtgacctagtt 1749006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 7443152 - 7443120
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  7443152 tactccctccgtccctgaataagtgacctagtt 7443120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 14707535 - 14707567
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  14707535 tactccctccgtcccttaataaatgacctagtt 14707567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 18718500 - 18718468
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  18718500 tactccctccgtcccttaataaatgacctagtt 18718468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 23671637 - 23671605
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  23671637 tactccctccgtcccttaataaatgacctagtt 23671605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 40425249 - 40425281
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  40425249 tactccctccgtcccttaataaatgacctagtt 40425281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 42038523 - 42038555
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||| ||||||||||||||||    
T  42038523 tactccctccgtccctaaataagtgacctagtt 42038555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 12751 - 12784
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||| ||||||||||||||||    
T  12751 ttactccctccgtccctaaataagtgacctagtt 12784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 10392 - 10425
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||| ||||||||||||||||    
T  10392 ttactccctccgtccctaaataagtgacctagtt 10425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 14058 - 14091
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||| ||||||||||||||||    
T  14058 ttactccctccgtccctaaataagtgacctagtt 14091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 30692 - 30651
Alignment:
Q  325 agtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    |||||||||||||  | |||||||||||||||||||||||||    
T  30692 agtcaactcatgtcaaaccttcatattttttaataaaatttt 30651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 30529049 - 30529082
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  30529049 ttactccctccgtcccttaataaatgacctagtt 30529082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 46862856 - 46862827
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  46862856 tactccctccgtcccttaataagtgaccta 46862827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 50777297 - 50777268
Alignment:
Q  376 tactccctccgtcccttaataagtgaccta 405  Q
    ||||||||||||||||||||||||||||||    
T  50777297 tactccctccgtcccttaataagtgaccta 50777268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 50876626 - 50876593
Alignment:
Q  375 ttactccctccgtcccttaataagtgacctagtt 408  Q
    ||||||||||||||||||||||| ||||||||||    
T  50876626 ttactccctccgtcccttaataaatgacctagtt 50876593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 25532039 - 25532007
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  25532039 tactccctccgtcccttaataaatgacctagtt 25532007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 36035947 - 36035915
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||| ||||||||||||||||||||||||||||    
T  36035947 tacttcctccgtcccttaataagtgacctagtt 36035915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 39354264 - 39354296
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  39354264 tactccctccgtcccttaataaatgacctagtt 39354296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 48264811 - 48264843
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  48264811 tactccctccgtcccttaataaatgacctagtt 48264843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 21576 - 21628
Alignment:
Q  314 ccttactttgaagtcaactcatgtgcagccttcatattttttaataaaatttt 366  Q
    |||| |||| |||||||| |||||| || |||||||||||||||| |||||||    
T  21576 cctttcttttaagtcaacgcatgtgtagacttcatattttttaatgaaatttt 21628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 15216 - 15248
Alignment:
Q  376 tactccctccgtcccttaataagtgacctagtt 408  Q
    |||||||||||||||||||||| ||||||||||    
T  15216 tactccctccgtcccttaataaatgacctagtt 15248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University