View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_2 (Length: 839)
Name: NF2552_low_2
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 41550201 - 41550603
Alignment:
| Q |
8 |
gagagagatgaattgcaccgagccaatatgacaatatcagtggtcatggtggtaggggggactggaacacaacagtgatcatcactcattctcagtacta |
107 |
Q |
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| T |
41550201 |
gagacagatgaattgcaccgagccaatatgacaatatcagtggtcatggtggtaggggggactggaacacaacagtgatcatcactcattctcagtacta |
41550300 |
T |
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| Q |
108 |
taggtcacggcagtataggaccacatggagttcaggactacttgaagtcattaacctatattgtcgttgtaa----taattatactaaaaattaaagtta |
203 |
Q |
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| T |
41550301 |
taggtcacggcagtgtaggaccacatggagttcaggactacttgaagtcattaacctatattgtcgttgtaataattaattatactaaaaattaaagtta |
41550400 |
T |
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| Q |
204 |
atgaatatgttaaattttctttaaaattgtaagcattctgtcaaattagtattgnnnnnnngcaaattgacaaattgatcttgagattgtaaaatgtcag |
303 |
Q |
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| T |
41550401 |
atgaatatgttaaattttctttaaaattgtaagcattctgtcaaattattattg-atttttgcaaattgacaaattgatcttgagattgtaaaatgtctg |
41550499 |
T |
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| Q |
304 |
tcttgatggtctatgtaaact---tttacttatgactaggaagtgaaattttaagtgaatatgtgctccttttacgttgatctcgtatcaatgttatata |
400 |
Q |
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| T |
41550500 |
tcttga-gattga--caaattttctttacttatgactacgaagtgaaattttaagtgaatatgtacttcttttacgttgatctcgtatcaatgttatata |
41550596 |
T |
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| Q |
401 |
agactaa |
407 |
Q |
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| T |
41550597 |
atactaa |
41550603 |
T |
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