View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_22 (Length: 386)
Name: NF2552_low_22
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 41697553 - 41697914
Alignment:
| Q |
1 |
ccaatcccaccagctacaatttcatcttcagctggtggtactgaatttagagtgaatgcctaatgatcataaagaaaattttgttcttaatacttacttt |
100 |
Q |
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| T |
41697553 |
ccaatcccaccagctacaatttcatcttcagctggtggtactgaatttagagtgaatgcctaatgatcataaagcaaattttgttcttaatacttacttt |
41697652 |
T |
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| Q |
101 |
aatattaagagatcatttgaaataatagggaatttttaccaatccattgctattaaatgcaaatgcagagcttggaagctccccagcatatgtataagca |
200 |
Q |
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| T |
41697653 |
aatattaagagatcatttgaaataatagggaatttttaccaatccattgctattaaatgcaaatgcagagcttggaagctccccagcatatgtataagca |
41697752 |
T |
|
| Q |
201 |
acaaagaatagcccatttggcaatcttcctttaattaagtagctgcataacataaagaccaaaaaaggaaagaatacttataaagcaattttatttgaat |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697753 |
acaaagaatagcccatttggcaatattcctttaattaagtagctgcataacataaagaccaaaaaaggaaagaatacttataaagcaattttatttgaat |
41697852 |
T |
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| Q |
301 |
tcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697853 |
tcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttg |
41697914 |
T |
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