View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_23 (Length: 341)
Name: NF2552_low_23
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 38049167 - 38049478
Alignment:
| Q |
1 |
acctcttttgaaggtgggtctccactcaatgtcaaatccgattggaatttgcatcatgtctcttttcttttcttcaatgctttttaggaactttgttaca |
100 |
Q |
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| T |
38049167 |
acctcttttgaaggtgggtctccactcaatgtcaaatccgattggaatttgaatcatgtctcttttcttttcttcaatgatttttaggaactttgttaca |
38049266 |
T |
|
| Q |
101 |
gctttctccacatcagtaaacgtcctactgtacataattttcccacaaaacttcattacaggcaacctcatctttaaatggccttgcaacaat-aaaaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
38049267 |
gctttctccacatcagtaaacgtcctactgtacataattttcccacaaaacttcattacaggcaacctcgtctttaaatggccttgcaacaataaaaaaa |
38049366 |
T |
|
| Q |
200 |
gacatgtcaaaagtttatcataaataaaaccaaaaggaactaactacttatagaaatttatccatagttttattttgcaaagagaaagatataggatagt |
299 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38049367 |
gacatgtcaaaagtttatc----ataaaaccaaaaggaactaactacttatagaaatttatccatagttttattttgcaatgagaaagatataggatagt |
38049462 |
T |
|
| Q |
300 |
cttcatatacactgga |
315 |
Q |
| |
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|||| ||||||||||| |
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| T |
38049463 |
cttcctatacactgga |
38049478 |
T |
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