View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2552_low_3 (Length: 574)
Name: NF2552_low_3
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 213 - 558
Target Start/End: Complemental strand, 10405003 - 10404658
Alignment:
| Q |
213 |
atgaaatgagattaatttattatttccaattatccacttccaagagttaatacattattaaacgagatggaaagattgaccatgcgtccatgcccaatat |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10405003 |
atgaaatgagattaatttactatttccaattatccacttccaagaattaatacattattaaacgagatggaaagattgaccatgcgtccatgcccaatat |
10404904 |
T |
|
| Q |
313 |
ataacttttataaagtgatcaacacttacatatatgtatgtgtgtcattaacagttgttccataatcagcctttaattagatacgtcaaatatttttcaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404903 |
ataacttttataaagtgatcaacacttagatatatgtatgtgtgtcattaacagttgttccataatcagcctttaattagatacgtcaaatatttttcaa |
10404804 |
T |
|
| Q |
413 |
ttgtttgcaaaaagatatccgatttaggcttattaaaaaatttgtatgtgtatggtgccctaaaattttaatttatatattatttagcctcctttccttt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404803 |
ttgtttgcaaaaagatatccgatttaggcttattaaaaaatttatatgtgtatggtgccctaaaattttaatttatatattatttagcctcctttccttt |
10404704 |
T |
|
| Q |
513 |
tgtgggttagtaacttggttccagctatcatttttgtatctttcgt |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404703 |
tgtgggttagtaacttggttccagctatcatttttgtatctttcgt |
10404658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 10405238 - 10405042
Alignment:
| Q |
13 |
aatatatagtactatcctttacatattatattatccaattannnnnnnnctctcattctgtcgcaaaacaatattaaaacgtgtgtaaaatttctctagc |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10405238 |
aatatttagtactatcctttacatattat-----ccaattattttttctctctcattctgtcgcaaaacaatattaaaacgtgtgtaaaatttctctagc |
10405144 |
T |
|
| Q |
113 |
tagtgtgactcaatcactcaaagtaacgtatgtaaaaatcccactttaacgtcnnnnnnnnnnnnntcccaccttaatttgccaaatctaacaccacgat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10405143 |
tagtgtgactcaatcactcaaagtaacgtatgtaaaaatcccactttaacgtc--aaaaaaaaatatcccaccttaatttgccaaatctaacaccacgat |
10405046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University